Resource

Id summary/zemke2023Conserved/atac_fragments/M1_mac3_deepcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for M1_mac3_deep from zemke2023Conserved.
Description
Labels
  • age: 14 y
  • assay: 10x_Multiome
  • brain_region: m1
  • cell_meta_resource_id: summary/zemke2023Conserved/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: 70313
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: single_nucleus
  • sample_id: M1_Mac3
  • sequencing_platform: Illumina
  • sex: M
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCTAAGGTCTTTGACT-1, ATTAGTCCACATTGCA-1, TGACCTTGTGTTGCAA-1, TGCTAACAGCAAGGTA-1, GGCTTCAAGGCTGTCA-1 (top 5 of 662708 values)
count int

count
HISTOGRAM FOR count [1, 19]
n
598,521,745
mean
1.79
sd
1.1

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 598521745
chr1 56290297
chr2 36002466
chr3 37320833
chr4 31176096
chr5 26770567
chr6 31874507
chr7 39197861
chr8 26509710
chr9 27799140
chr10 29817684
chr11 28911215
chr12 23005253
chr13 22986023
chr14 32689874
chr15 26153867
chr16 29935007
chr17 14652215
chr18 12415163
chr19 27621812
chr20 25085871
chrX 11819330
chrY 486954

Fragment lengths

fragments min max mean median
fragments 598521745 1 5103 189.52 159
global fragment-length histogram

Files

Filename Size md5
4DNFIUO5BNXB.tsv.gz 5.8 GB 9fda28fdd238a20ab41cf3b604231552
4DNFIUO5BNXB.tsv.gz.tbi 1.79 MB fd15acd4417c046a9db1e570f57d4ceb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.49 KB f3537c73fd8073abecb1c563fc1fa866
statistics/