Resource

Id summary/zemke2023Conserved/pseudobulk_atac/human_m1/L6_CTcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in human_m1 for L6_CT cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: m1
  • cell_type: L6_CT
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_human_m1_L6_CT_atac_rpkm float

zemke2023Conserved_human_m1_L6_CT_atac_rpkm
Pseudo-bulk RPKM atac in human_m1 for L6_CT cell type
 HISTOGRAM FOR zemke2023Conserved_human_m1_L6_CT_atac_rpkm [0, 8.31e+04]
n
3,099,750,718
mean
3.16
sd
16.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 309975071894.88% 171910586
chr1 248956422 100.00% 14142461
chr2 242193529 100.00% 14085793
chr3 198295559 100.00% 11710551
chr4 190214555 100.00% 10629430
chr5 181538259 100.00% 10597639
chr6 170805979 100.00% 10022791
chr7 159345973 100.00% 9547792
chr8 145138636 100.00% 8529141
chr9 138394717 100.00% 7306805
chr10 133797422 100.00% 8018018
chr11 135086622 100.00% 8233774
chr12 133275309 100.00% 8071819
chr13 114364328 100.00% 5469105
chr14 107043718 100.00% 5346988
chr15 101991189 100.00% 5149385
chr16 90338345 100.00% 5062747
chr17 83257441 100.00% 5285876
chr18 80373285 100.00% 4585071
chr19 58617616 100.00% 3811913
chr20 64444167 100.00% 3937018
chr21 46709983 100.00% 2262616
chr22 50818468 100.00% 2548884
chrM 16569 100.00% 1656
chrX 156040895 100.00% 6169401
chrY 57227415 100.00% 913450
GL000008.2 209709 100.00% 12009
GL000009.2 201709 100.00% 11575
GL000194.1 191469 100.00% 11966
GL000195.1 182896 100.00% 8579
GL000205.2 185591 100.00% 11214
GL000208.1 92689 100.00% 3079
GL000213.1 164239 100.00% 3725
GL000214.1 137718 100.00% 8036
GL000216.2 176608 100.00% 12919
GL000218.1 161147 100.00% 8548
GL000219.1 179198 100.00% 8513
GL000220.1 161802 100.00% 10114
GL000221.1 155397 100.00% 7471
GL000224.1 179693 100.00% 7850
GL000225.1 211173 100.00% 16730
GL000226.1 15008 100.00% 1228
KI270302.1 2274 100.00% 54
KI270303.1 1942 100.00% 84
KI270304.1 2165 100.00% 85
KI270305.1 1472 100.00% 63
KI270310.1 1201 100.00% 84
KI270311.1 12399 100.00% 115
KI270312.1 998 100.00% 42
KI270315.1 2276 100.00% 93
KI270316.1 1444 100.00% 50
KI270317.1 37690 100.00% 104
KI270320.1 4416 100.00% 270
KI270322.1 21476 100.00% 234
KI270329.1 1040 100.00% 47
KI270330.1 1652 100.00% 150
KI270333.1 2699 100.00% 261
KI270334.1 1368 100.00% 40
KI270335.1 1048 100.00% 51
KI270336.1 1026 100.00% 97
KI270337.1 1121 100.00% 111
KI270338.1 1428 100.00% 18
KI270340.1 1428 100.00% 23
KI270362.1 3530 100.00% 100
KI270363.1 1803 100.00% 60
KI270364.1 2855 100.00% 55
KI270366.1 8320 100.00% 325
KI270371.1 2805 100.00% 39
KI270372.1 1650 100.00% 25
KI270373.1 1451 100.00% 22
KI270374.1 2656 100.00% 39
KI270375.1 2378 100.00% 31
KI270376.1 1136 100.00% 5
KI270378.1 1048 100.00% 7
KI270379.1 1045 100.00% 27
KI270381.1 1930 100.00% 67
KI270382.1 4215 100.00% 93
KI270383.1 1750 100.00% 49
KI270384.1 1658 100.00% 27
KI270385.1 990 100.00% 9
KI270386.1 1788 100.00% 60
KI270387.1 1537 100.00% 57
KI270388.1 1216 100.00% 17
KI270389.1 1298 100.00% 28
KI270390.1 2387 100.00% 27
KI270391.1 1484 100.00% 15
KI270392.1 971 100.00% 9
KI270393.1 1308 100.00% 30
KI270394.1 970 100.00% 12
KI270395.1 1143 100.00% 77
KI270396.1 1880 100.00% 68
KI270411.1 2646 100.00% 153
KI270412.1 1179 100.00% 59
KI270414.1 2489 100.00% 89
KI270417.1 2043 100.00% 5
KI270418.1 2145 100.00% 76
KI270419.1 1029 100.00% 28
KI270420.1 2321 100.00% 64
KI270422.1 1445 100.00% 41
KI270423.1 981 100.00% 9
KI270424.1 2140 100.00% 101
KI270425.1 1884 100.00% 54
KI270429.1 1361 100.00% 56
KI270435.1 92983 100.00% 4180
KI270438.1 112505 100.00% 5748
KI270442.1 392061 100.00% 23837
KI270448.1 7992 100.00% 399
KI270465.1 1774 100.00% 96
KI270466.1 1233 100.00% 123
KI270467.1 3920 100.00% 353
KI270468.1 4055 100.00% 186
KI270507.1 5353 100.00% 393
KI270508.1 1951 100.00% 162
KI270509.1 2318 100.00% 149
KI270510.1 2415 100.00% 141
KI270511.1 8127 100.00% 375
KI270512.1 22689 100.00% 1049
KI270515.1 6361 100.00% 453
KI270516.1 1300 100.00% 81
KI270517.1 3253 100.00% 199
KI270518.1 2186 100.00% 138
KI270519.1 138126 100.00% 7138
KI270521.1 7642 100.00% 264
KI270522.1 5674 100.00% 121
KI270528.1 2983 100.00% 31
KI270529.1 1899 100.00% 30
KI270530.1 2168 100.00% 59
KI270538.1 91309 100.00% 2857
KI270539.1 993 100.00% 18
KI270544.1 1202 100.00% 84
KI270548.1 1599 100.00% 30
KI270579.1 31033 100.00% 749
KI270580.1 1553 100.00% 92
KI270581.1 7046 100.00% 260
KI270582.1 6504 100.00% 283
KI270583.1 1400 100.00% 97
KI270584.1 4513 100.00% 301
KI270587.1 2969 100.00% 199
KI270588.1 6158 100.00% 356
KI270589.1 44474 100.00% 1799
KI270590.1 4685 100.00% 332
KI270591.1 5796 100.00% 393
KI270593.1 3041 100.00% 210
KI270706.1 175055 100.00% 10323
KI270707.1 32032 100.00% 1647
KI270708.1 127682 100.00% 6224
KI270709.1 66860 100.00% 4575
KI270710.1 40176 100.00% 1792
KI270711.1 42210 100.00% 2150
KI270712.1 176043 100.00% 7283
KI270713.1 40745 100.00% 2572
KI270714.1 41717 100.00% 2469
KI270715.1 161471 100.00% 4499
KI270716.1 153799 100.00% 3171
KI270717.1 40062 100.00% 2425
KI270718.1 38054 100.00% 2251
KI270719.1 176845 100.00% 7340
KI270720.1 39050 100.00% 2149
KI270721.1 100316 100.00% 7852
KI270722.1 194050 100.00% 8125
KI270723.1 38115 100.00% 2085
KI270724.1 39555 100.00% 2471
KI270725.1 172810 100.00% 7014
KI270726.1 43739 100.00% 418
KI270727.1 448248 100.00% 10426
KI270728.1 1872759 100.00% 23954
KI270729.1 280839 100.00% 8389
KI270730.1 112551 100.00% 4746
KI270731.1 150754 100.00% 5528
KI270732.1 41543 100.00% 2709
KI270733.1 179772 100.00% 10558
KI270734.1 165050 100.00% 8658
KI270735.1 42811 100.00% 2626
KI270736.1 181920 100.00% 10107
KI270737.1 103838 100.00% 2477
KI270738.1 99375 100.00% 2310
KI270739.1 73985 100.00% 1311
KI270740.1 37240 100.00% 1357
KI270741.1 157432 100.00% 5126
KI270742.1 186739 100.00% 10251
KI270743.1 210658 100.00% 11811
KI270744.1 168472 100.00% 8998
KI270745.1 41891 100.00% 2234
KI270746.1 66486 100.00% 3281
KI270747.1 198735 100.00% 4958
KI270748.1 93321 100.00% 2470
KI270749.1 158759 100.00% 7096
KI270750.1 148850 100.00% 7468
KI270751.1 150742 100.00% 8084
KI270752.1 27745 100.00% 31
KI270753.1 62944 100.00% 2141
KI270754.1 40191 100.00% 2747
KI270755.1 36723 100.00% 1102
KI270756.1 79590 100.00% 3481
KI270757.1 71251 100.00% 3680
445 contigs with no values (167367270 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 171910586 10 27210150 18.03 10
global segment-length histogram

Files

Filename Size md5
L6_CT_ATAC_RPKM.bw 904.37 MB 360f9daf58446ee08bfb3d4183346104
genomic_resource.yaml 1.21 KB 848ea6cd1d899e955310f5462432bbfa
statistics/