Resource

Id summary/zemke2023Conserved/pseudobulk_atac/human_m1/LAMP5content_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in human_m1 for LAMP5 cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: m1
  • cell_type: LAMP5
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_human_m1_LAMP5_atac_rpkm float

zemke2023Conserved_human_m1_LAMP5_atac_rpkm
Pseudo-bulk RPKM atac in human_m1 for LAMP5 cell type
 HISTOGRAM FOR zemke2023Conserved_human_m1_LAMP5_atac_rpkm [0, 8.9e+04]
n
3,099,750,718
mean
3.13
sd
22.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 309975071894.88% 140452344
chr1 248956422 100.00% 11863434
chr2 242193529 100.00% 11645396
chr3 198295559 100.00% 9424974
chr4 190214555 100.00% 8403017
chr5 181538259 100.00% 8544348
chr6 170805979 100.00% 8038888
chr7 159345973 100.00% 7787226
chr8 145138636 100.00% 6912560
chr9 138394717 100.00% 6036761
chr10 133797422 100.00% 6537937
chr11 135086622 100.00% 6737552
chr12 133275309 100.00% 6673429
chr13 114364328 100.00% 4438652
chr14 107043718 100.00% 4432095
chr15 101991189 100.00% 4319713
chr16 90338345 100.00% 4297225
chr17 83257441 100.00% 4467912
chr18 80373285 100.00% 3662588
chr19 58617616 100.00% 3221465
chr20 64444167 100.00% 3374845
chr21 46709983 100.00% 1851702
chr22 50818468 100.00% 2223774
chrM 16569 100.00% 1656
chrX 156040895 100.00% 4601686
chrY 57227415 100.00% 595866
GL000008.2 209709 100.00% 7879
GL000009.2 201709 100.00% 8906
GL000194.1 191469 100.00% 9905
GL000195.1 182896 100.00% 7133
GL000205.2 185591 100.00% 9625
GL000208.1 92689 100.00% 2059
GL000213.1 164239 100.00% 1998
GL000214.1 137718 100.00% 6480
GL000216.2 176608 100.00% 10494
GL000218.1 161147 100.00% 7324
GL000219.1 179198 100.00% 7426
GL000220.1 161802 100.00% 8077
GL000221.1 155397 100.00% 5783
GL000224.1 179693 100.00% 6623
GL000225.1 211173 100.00% 14817
GL000226.1 15008 100.00% 1076
KI270302.1 2274 100.00% 60
KI270303.1 1942 100.00% 50
KI270304.1 2165 100.00% 38
KI270305.1 1472 100.00% 54
KI270310.1 1201 100.00% 85
KI270311.1 12399 100.00% 97
KI270312.1 998 100.00% 28
KI270315.1 2276 100.00% 64
KI270316.1 1444 100.00% 27
KI270317.1 37690 100.00% 77
KI270320.1 4416 100.00% 208
KI270322.1 21476 100.00% 162
KI270329.1 1040 100.00% 32
KI270330.1 1652 100.00% 151
KI270333.1 2699 100.00% 247
KI270334.1 1368 100.00% 29
KI270335.1 1048 100.00% 32
KI270336.1 1026 100.00% 93
KI270337.1 1121 100.00% 105
KI270338.1 1428 100.00% 1
KI270340.1 1428 100.00% 25
KI270362.1 3530 100.00% 66
KI270363.1 1803 100.00% 36
KI270364.1 2855 100.00% 33
KI270366.1 8320 100.00% 157
KI270371.1 2805 100.00% 25
KI270372.1 1650 100.00% 1
KI270373.1 1451 100.00% 1
KI270374.1 2656 100.00% 24
KI270375.1 2378 100.00% 25
KI270376.1 1136 100.00% 12
KI270378.1 1048 100.00% 9
KI270379.1 1045 100.00% 17
KI270381.1 1930 100.00% 23
KI270382.1 4215 100.00% 64
KI270383.1 1750 100.00% 24
KI270384.1 1658 100.00% 9
KI270385.1 990 100.00% 20
KI270386.1 1788 100.00% 33
KI270387.1 1537 100.00% 39
KI270388.1 1216 100.00% 13
KI270389.1 1298 100.00% 26
KI270390.1 2387 100.00% 33
KI270391.1 1484 100.00% 13
KI270392.1 971 100.00% 11
KI270393.1 1308 100.00% 42
KI270394.1 970 100.00% 17
KI270395.1 1143 100.00% 57
KI270396.1 1880 100.00% 37
KI270411.1 2646 100.00% 127
KI270412.1 1179 100.00% 30
KI270414.1 2489 100.00% 75
KI270417.1 2043 100.00% 17
KI270418.1 2145 100.00% 55
KI270419.1 1029 100.00% 19
KI270420.1 2321 100.00% 46
KI270422.1 1445 100.00% 25
KI270423.1 981 100.00% 18
KI270424.1 2140 100.00% 112
KI270425.1 1884 100.00% 29
KI270429.1 1361 100.00% 47
KI270435.1 92983 100.00% 3092
KI270438.1 112505 100.00% 4640
KI270442.1 392061 100.00% 17583
KI270448.1 7992 100.00% 259
KI270465.1 1774 100.00% 67
KI270466.1 1233 100.00% 122
KI270467.1 3920 100.00% 321
KI270468.1 4055 100.00% 125
KI270507.1 5353 100.00% 322
KI270508.1 1951 100.00% 132
KI270509.1 2318 100.00% 128
KI270510.1 2415 100.00% 125
KI270511.1 8127 100.00% 250
KI270512.1 22689 100.00% 773
KI270515.1 6361 100.00% 395
KI270516.1 1300 100.00% 79
KI270517.1 3253 100.00% 198
KI270518.1 2186 100.00% 131
KI270519.1 138126 100.00% 4938
KI270521.1 7642 100.00% 202
KI270522.1 5674 100.00% 49
KI270528.1 2983 100.00% 17
KI270529.1 1899 100.00% 23
KI270530.1 2168 100.00% 20
KI270538.1 91309 100.00% 2153
KI270539.1 993 100.00% 47
KI270544.1 1202 100.00% 47
KI270548.1 1599 100.00% 13
KI270579.1 31033 100.00% 484
KI270580.1 1553 100.00% 67
KI270581.1 7046 100.00% 171
KI270582.1 6504 100.00% 152
KI270583.1 1400 100.00% 73
KI270584.1 4513 100.00% 221
KI270587.1 2969 100.00% 173
KI270588.1 6158 100.00% 292
KI270589.1 44474 100.00% 1349
KI270590.1 4685 100.00% 284
KI270591.1 5796 100.00% 388
KI270593.1 3041 100.00% 151
KI270706.1 175055 100.00% 8456
KI270707.1 32032 100.00% 1241
KI270708.1 127682 100.00% 3741
KI270709.1 66860 100.00% 3706
KI270710.1 40176 100.00% 1243
KI270711.1 42210 100.00% 1949
KI270712.1 176043 100.00% 4570
KI270713.1 40745 100.00% 2269
KI270714.1 41717 100.00% 2120
KI270715.1 161471 100.00% 2611
KI270716.1 153799 100.00% 2188
KI270717.1 40062 100.00% 1812
KI270718.1 38054 100.00% 1638
KI270719.1 176845 100.00% 5105
KI270720.1 39050 100.00% 1385
KI270721.1 100316 100.00% 6739
KI270722.1 194050 100.00% 5704
KI270723.1 38115 100.00% 1793
KI270724.1 39555 100.00% 1953
KI270725.1 172810 100.00% 5066
KI270726.1 43739 100.00% 192
KI270727.1 448248 100.00% 7344
KI270728.1 1872759 100.00% 15333
KI270729.1 280839 100.00% 6404
KI270730.1 112551 100.00% 3550
KI270731.1 150754 100.00% 4538
KI270732.1 41543 100.00% 2110
KI270733.1 179772 100.00% 8142
KI270734.1 165050 100.00% 7165
KI270735.1 42811 100.00% 1951
KI270736.1 181920 100.00% 8489
KI270737.1 103838 100.00% 1953
KI270738.1 99375 100.00% 1948
KI270739.1 73985 100.00% 933
KI270740.1 37240 100.00% 787
KI270741.1 157432 100.00% 4171
KI270742.1 186739 100.00% 7860
KI270743.1 210658 100.00% 8723
KI270744.1 168472 100.00% 6917
KI270745.1 41891 100.00% 1406
KI270746.1 66486 100.00% 2466
KI270747.1 198735 100.00% 3479
KI270748.1 93321 100.00% 2191
KI270749.1 158759 100.00% 5192
KI270750.1 148850 100.00% 5162
KI270751.1 150742 100.00% 6147
KI270752.1 27745 100.00% 17
KI270753.1 62944 100.00% 1361
KI270754.1 40191 100.00% 2256
KI270755.1 36723 100.00% 583
KI270756.1 79590 100.00% 2032
KI270757.1 71251 100.00% 2759
445 contigs with no values (167367270 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 140452344 10 25879950 22.07 10
global segment-length histogram

Files

Filename Size md5
LAMP5_ATAC_RPKM.bw 717.88 MB 7fb3e4fef3035c154068bdd0c4c69b49
genomic_resource.yaml 1.21 KB cd4cce49edf413a3b5c693d8b9c4a980
statistics/