Resource

Id summary/zemke2023Conserved/pseudobulk_atac/macaque_m1/Endocontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in macaque_m1 for Endo cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: m1
  • cell_type: Endo
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_macaque_m1_Endo_atac_rpkm float

zemke2023Conserved_macaque_m1_Endo_atac_rpkm
Pseudo-bulk RPKM atac in macaque_m1 for Endo cell type
 HISTOGRAM FOR zemke2023Conserved_macaque_m1_Endo_atac_rpkm [0, 1.01e+05]
n
2,971,331,530
mean
3.04
sd
34.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2971331530 21096154
chr1 223616942 100.00% 1917267
chr2 196197964 100.00% 1290987
chr3 185288947 100.00% 1289243
chr4 169963040 100.00% 1148336
chr5 187317192 100.00% 974535
chr6 179085566 100.00% 1090483
chr7 169868564 100.00% 1347166
chr8 145679320 100.00% 908092
chr9 134124166 100.00% 992244
chr10 99517758 100.00% 1058347
chr11 133066086 100.00% 972208
chr12 130043856 100.00% 814239
chr13 108737130 100.00% 772736
chr14 128056306 100.00% 1022859
chr15 113283604 100.00% 908733
chr16 79627064 100.00% 984382
chr17 95433459 100.00% 572565
chr18 74474043 100.00% 448705
chr19 58315233 100.00% 845877
chr20 77137495 100.00% 769685
chrM 16564 100.00% 1619
chrX 153388924 100.00% 473689
chrY 11753682 100.00% 24191
ML143117.1 738392 4775
ML143118.1 669983 2140
ML143119.1 862827 2208
ML143120.1 823856 1232
ML143121.1 1005795 1925
ML143122.1 733739 3554
ML143123.1 539197 6059
ML143124.1 1117261 3159
QNVO02000039.1 29490 229
QNVO02000040.1 29551 357
QNVO02000041.1 31521 50
QNVO02000042.1 35220 843
QNVO02000043.1 43762 472
QNVO02000044.1 43668 136
QNVO02000045.1 45264 39
QNVO02000046.1 74751 273
QNVO02000047.1 75692 1743
QNVO02000048.1 64301 128
QNVO02000049.1 84426 262
QNVO02000050.1 88635 896
QNVO02000051.1 115549 768
QNVO02000052.1 31739 297
QNVO02000061.1 28076 381
QNVO02000062.1 30974 86
QNVO02000063.1 34094 228
QNVO02000064.1 35836 10
QNVO02000065.1 36993 194
QNVO02000066.1 42603 39
QNVO02000067.1 44793 157
QNVO02000068.1 36901 202
QNVO02000069.1 52625 110
QNVO02000070.1 65186 62
QNVO02000071.1 70089 262
QNVO02000072.1 75026 103
QNVO02000073.1 86584 887
QNVO02000074.1 67726 217
QNVO02000082.1 30461 129
QNVO02000083.1 34828 201
QNVO02000084.1 34758 134
QNVO02000085.1 34993 536
QNVO02000086.1 40200 90
QNVO02000087.1 35195 19
QNVO02000088.1 39160 992
QNVO02000096.1 53508 427
QNVO02000097.1 44853 151
QNVO02000098.1 55639 173
QNVO02000099.1 65990 666
QNVO02000100.1 57542 159
QNVO02000101.1 89870 293
QNVO02000102.1 123715 811
QNVO02000113.1 32550 28
QNVO02000114.1 34793 89
QNVO02000115.1 44605 445
QNVO02000116.1 36893 37
QNVO02000117.1 37575 104
QNVO02000118.1 37831 196
QNVO02000119.1 37661 157
QNVO02000120.1 44420 49
QNVO02000121.1 45281 29
QNVO02000122.1 46256 63
QNVO02000123.1 52830 1103
QNVO02000124.1 79630 1001
QNVO02000125.1 82543 171
QNVO02000126.1 51233 144
QNVO02000127.1 56227 902
QNVO02000128.1 27245 113
QNVO02000129.1 29900 77
QNVO02000130.1 62273 800
QNVO02000141.1 35411 46
QNVO02000142.1 36170 51
QNVO02000143.1 38712 41
QNVO02000144.1 39777 55
QNVO02000145.1 40306 95
QNVO02000146.1 39466 524
QNVO02000147.1 52687 565
QNVO02000148.1 53925 339
QNVO02000149.1 53926 167
QNVO02000150.1 58262 1399
QNVO02000151.1 78748 1652
QNVO02000152.1 88419 1358
QNVO02000153.1 94627 429
QNVO02000154.1 27791 831
QNVO02000166.1 28177 44
QNVO02000167.1 33884 17
QNVO02000168.1 34745 36
QNVO02000169.1 50438 67
QNVO02000170.1 43437 137
QNVO02000171.1 52552 849
QNVO02000172.1 54058 19
QNVO02000173.1 54071 5
QNVO02000174.1 54349 49
QNVO02000175.1 63611 1413
QNVO02000176.1 65150 268
QNVO02000177.1 65140 284
QNVO02000178.1 65979 955
QNVO02000179.1 63325 1337
QNVO02000180.1 53701 351
QNVO02000181.1 27229 35
QNVO02000194.1 25947 53
QNVO02000195.1 181889 495
QNVO02000196.1 31091 5
QNVO02000197.1 31166 5
QNVO02000198.1 31184 7
QNVO02000199.1 31250 5
QNVO02000200.1 43610 47
QNVO02000201.1 37523 53
QNVO02000202.1 38541 75
QNVO02000203.1 45093 41
QNVO02000204.1 46306 135
QNVO02000205.1 46347 452
QNVO02000206.1 50375 81
QNVO02000207.1 59026 225
QNVO02000208.1 61686 137
QNVO02000209.1 61907 75
QNVO02000210.1 165269 841
QNVO02000211.1 27125 91
QNVO02000212.1 15354 1
QNVO02000216.1 32300 77
QNVO02000217.1 37145 297
QNVO02000218.1 37664 47
QNVO02000219.1 41176 321
QNVO02000220.1 41974 700
QNVO02000221.1 55554 660
QNVO02000222.1 76316 369
QNVO02000237.1 30450 381
QNVO02000238.1 39455 622
QNVO02000239.1 41056 494
QNVO02000240.1 44182 174
QNVO02000241.1 47076 130
QNVO02000242.1 53667 688
QNVO02000243.1 60928 1463
QNVO02000244.1 61817 1083
QNVO02000245.1 66433 655
QNVO02000246.1 71257 619
QNVO02000247.1 76390 1694
QNVO02000248.1 78939 429
QNVO02000249.1 81779 104
QNVO02000250.1 89493 1178
QNVO02000251.1 90411 348
QNVO02000252.1 134439 1643
QNVO02000253.1 58152 544
QNVO02000254.1 124323 960
QNVO02000255.1 183828 666
QNVO02000259.1 26680 92
QNVO02000260.1 32580 33
QNVO02000261.1 33548 236
QNVO02000262.1 37051 129
QNVO02000263.1 39993 229
QNVO02000264.1 40438 65
QNVO02000265.1 43990 82
QNVO02000266.1 48895 484
QNVO02000267.1 50188 132
QNVO02000268.1 51363 980
QNVO02000269.1 35879 152
QNVO02000270.1 54860 389
QNVO02000271.1 55541 493
QNVO02000272.1 55582 79
QNVO02000273.1 59940 43
QNVO02000274.1 82305 919
QNVO02000275.1 118135 2912
QNVO02000276.1 133025 323
QNVO02000277.1 52076 101
QNVO02000278.1 116334 3004
QNVO02000279.1 65914 649
QNVO02000293.1 26276 23
QNVO02000294.1 34752 33
QNVO02000295.1 36919 149
QNVO02000296.1 64383 300
QNVO02000297.1 30586 170
QNVO02000298.1 35391 450
QNVO02000299.1 40656 197
QNVO02000300.1 51074 286
QNVO02000301.1 48342 49
QNVO02000302.1 52951 24
QNVO02000303.1 86201 367
QNVO02000304.1 92040 459
QNVO02000305.1 52934 311
QNVO02000306.1 54780 291
QNVO02000315.1 25300 35
QNVO02000316.1 29349 21
QNVO02000317.1 29445 9
QNVO02000318.1 29713 17
QNVO02000319.1 36488 153
QNVO02000320.1 29788 49
QNVO02000321.1 42544 241
QNVO02000322.1 43837 71
QNVO02000323.1 51062 589
QNVO02000324.1 54307 562
QNVO02000325.1 54760 126
QNVO02000326.1 59741 446
QNVO02000327.1 70296 82
QNVO02000328.1 72641 29
QNVO02000329.1 94715 710
QNVO02000330.1 130268 1069
QNVO02000331.1 134158 1152
QNVO02000332.1 47814 337
QNVO02000333.1 30503 53
QNVO02000334.1 1229889 2010
QNVO02000347.1 26875 52
QNVO02000348.1 27011 286
QNVO02000349.1 30037 422
QNVO02000350.1 34319 205
QNVO02000351.1 36085 21
QNVO02000352.1 37498 255
QNVO02000353.1 45706 249
QNVO02000354.1 47138 474
QNVO02000355.1 52252 160
QNVO02000356.1 54371 89
QNVO02000357.1 54530 528
QNVO02000358.1 54679 101
QNVO02000359.1 60005 439
QNVO02000360.1 75365 806
QNVO02000361.1 85793 524
QNVO02000362.1 90302 244
QNVO02000371.1 26685 21
QNVO02000372.1 29791 54
QNVO02000373.1 32640 29
QNVO02000374.1 34222 49
QNVO02000375.1 35517 136
QNVO02000376.1 37838 81
QNVO02000377.1 41651 125
QNVO02000378.1 41841 74
QNVO02000379.1 36351 55
QNVO02000380.1 48938 42
QNVO02000381.1 56442 113
QNVO02000382.1 68769 143
QNVO02000383.1 103593 194
QNVO02000384.1 185143 616
QNVO02000385.1 39093 53
QNVO02000393.1 27603 66
QNVO02000394.1 28241 37
QNVO02000395.1 38876 79
QNVO02000396.1 39393 43
QNVO02000397.1 47332 31
QNVO02000398.1 58084 420
QNVO02000399.1 57998 148
QNVO02000400.1 61300 474
QNVO02000401.1 62126 342
QNVO02000402.1 64491 928
QNVO02000403.1 76406 310
QNVO02000404.1 82950 483
QNVO02000405.1 101334 622
QNVO02000406.1 35732 73
QNVO02000424.1 27859 595
QNVO02000425.1 28798 566
QNVO02000426.1 31162 46
QNVO02000427.1 35826 39
QNVO02000428.1 41366 506
QNVO02000429.1 46105 504
QNVO02000430.1 51812 672
QNVO02000431.1 53832 800
QNVO02000432.1 55920 250
QNVO02000433.1 58999 161
QNVO02000434.1 61446 168
QNVO02000435.1 65479 382
QNVO02000436.1 72206 623
QNVO02000437.1 72836 510
QNVO02000438.1 73247 260
QNVO02000439.1 83758 1264
QNVO02000440.1 98820 576
QNVO02000441.1 31768 9
QNVO02000458.1 32194 33
QNVO02000459.1 133312 1060
QNVO02000460.1 35273 143
QNVO02000461.1 35782 37
QNVO02000462.1 36168 130
QNVO02000463.1 38408 73
QNVO02000464.1 28604 169
QNVO02000465.1 45844 156
QNVO02000466.1 54299 51
QNVO02000467.1 59871 193
QNVO02000468.1 66719 283
QNVO02000469.1 70864 107
QNVO02000470.1 76376 537
QNVO02000471.1 83314 1478
QNVO02000472.1 29721 72
QNVO02000473.1 53832 111
QNVO02000504.1 36031 600
QNVO02000505.1 39733 37
QNVO02000506.1 47833 457
QNVO02000507.1 47980 92
QNVO02000508.1 52082 176
QNVO02000509.1 54497 142
QNVO02000510.1 56716 109
QNVO02000511.1 64642 1405
QNVO02000512.1 65546 1264
QNVO02000513.1 66711 164
QNVO02000514.1 77799 454
QNVO02000515.1 85724 639
QNVO02000516.1 104447 983
QNVO02000517.1 29162 93
QNVO02000518.1 47554 75
QNVO02000519.1 16018 56
QNVO02000520.1 16072 17
QNVO02000521.1 15993 9
QNVO02000522.1 16197 27
QNVO02000523.1 16074 26
QNVO02000524.1 16042 45
QNVO02000525.1 16077 37
QNVO02000526.1 15853 42
QNVO02000527.1 15981 114
QNVO02000528.1 16244 17
QNVO02000529.1 32289 56
QNVO02000530.1 16160 21
QNVO02000531.1 16187 9
QNVO02000532.1 16363 21
QNVO02000533.1 16120 75
QNVO02000534.1 16055 37
QNVO02000535.1 16274 82
QNVO02000536.1 16364 1
QNVO02000537.1 16225 56
QNVO02000538.1 16356 40
QNVO02000539.1 16255 99
QNVO02000540.1 27321 168
QNVO02000541.1 16236 185
QNVO02000542.1 16356 49
QNVO02000543.1 16461 13
QNVO02000544.1 16455 149
QNVO02000545.1 16383 43
QNVO02000546.1 16352 83
QNVO02000547.1 15013 225
QNVO02000548.1 16280 59
QNVO02000549.1 16551 29
QNVO02000550.1 16444 17
QNVO02000551.1 56609 282
QNVO02000552.1 16439 33
QNVO02000553.1 16412 113
QNVO02000554.1 16632 43
QNVO02000555.1 16299 19
QNVO02000556.1 16406 64
QNVO02000557.1 16596 17
QNVO02000558.1 16436 17
QNVO02000559.1 16779 1
QNVO02000560.1 16773 28
QNVO02000561.1 13224 34
QNVO02000562.1 14311 43
QNVO02000563.1 16475 50
QNVO02000564.1 16734 1
QNVO02000565.1 15042 245
QNVO02000566.1 16653 70
QNVO02000567.1 16729 25
QNVO02000568.1 16730 41
QNVO02000569.1 16370 16
QNVO02000570.1 16749 47
QNVO02000571.1 16651 46
QNVO02000572.1 16692 51
QNVO02000573.1 24869 76
QNVO02000574.1 16634 47
QNVO02000575.1 16844 30
QNVO02000576.1 16892 30
QNVO02000577.1 16406 51
QNVO02000578.1 16960 19
QNVO02000579.1 16925 30
QNVO02000580.1 16946 1
QNVO02000581.1 17035 9
QNVO02000582.1 16874 74
QNVO02000583.1 16960 44
QNVO02000584.1 15132 54
QNVO02000585.1 17048 35
QNVO02000586.1 16930 197
QNVO02000587.1 16900 69
QNVO02000588.1 16782 89
QNVO02000589.1 16399 139
QNVO02000590.1 17005 332
QNVO02000591.1 16760 1
QNVO02000592.1 16880 1
QNVO02000593.1 16975 49
QNVO02000594.1 13066 114
QNVO02000595.1 17407 130
QNVO02000596.1 17041 15
QNVO02000597.1 17431 16
QNVO02000598.1 17069 31
QNVO02000599.1 17372 5
QNVO02000600.1 25112 208
QNVO02000601.1 16450 169
QNVO02000602.1 16857 102
QNVO02000603.1 17184 13
QNVO02000604.1 17258 7
QNVO02000605.1 17214 65
QNVO02000606.1 14066 27
QNVO02000607.1 17331 16
QNVO02000608.1 17274 7
QNVO02000609.1 17243 248
QNVO02000610.1 17185 45
QNVO02000611.1 16695 35
QNVO02000612.1 17197 7
QNVO02000613.1 17342 21
QNVO02000614.1 17231 17
QNVO02000615.1 17498 1
QNVO02000616.1 17275 21
QNVO02000617.1 29983 92
QNVO02000618.1 17398 151
QNVO02000619.1 17418 44
QNVO02000620.1 17582 17
QNVO02000621.1 17409 25
QNVO02000622.1 17349 13
QNVO02000623.1 17478 79
QNVO02000624.1 17439 13
QNVO02000625.1 17634 40
QNVO02000626.1 17843 1
QNVO02000627.1 17802 1
QNVO02000628.1 31063 97
QNVO02000632.1 17707 19
QNVO02000633.1 9903 9
QNVO02000634.1 17583 60
QNVO02000635.1 17715 24
QNVO02000636.1 17761 76
QNVO02000637.1 17739 41
QNVO02000638.1 17822 27
QNVO02000639.1 17886 1
QNVO02000640.1 17447 16
QNVO02000641.1 17932 39
QNVO02000642.1 37152 72
QNVO02000643.1 17654 60
QNVO02000644.1 17964 51
QNVO02000645.1 17871 36
QNVO02000646.1 17895 45
QNVO02000647.1 18023 1
QNVO02000648.1 17833 15
QNVO02000649.1 17917 39
QNVO02000650.1 18018 87
QNVO02000651.1 17912 9
QNVO02000652.1 17825 223
QNVO02000653.1 45053 108
QNVO02000654.1 17844 9
QNVO02000655.1 25372 93
QNVO02000656.1 17956 49
QNVO02000657.1 18075 17
QNVO02000658.1 17870 43
QNVO02000659.1 18079 49
QNVO02000660.1 18166 32
QNVO02000661.1 18142 73
QNVO02000662.1 18128 1
QNVO02000663.1 18335 1
QNVO02000664.1 30841 43
QNVO02000665.1 18029 103
QNVO02000666.1 18339 11
QNVO02000667.1 18298 1
QNVO02000668.1 17970 17
QNVO02000669.1 4886 1
QNVO02000670.1 17870 17
QNVO02000671.1 18327 88
QNVO02000672.1 18353 1
QNVO02000673.1 18435 27
QNVO02000674.1 18512 9
QNVO02000675.1 21919 1
QNVO02000676.1 18498 9
QNVO02000677.1 18217 21
QNVO02000678.1 18414 40
QNVO02000679.1 18158 476
QNVO02000680.1 18591 1
QNVO02000681.1 18512 29
QNVO02000682.1 18667 21
QNVO02000683.1 18610 1
QNVO02000684.1 18647 17
QNVO02000685.1 18566 182
QNVO02000686.1 13685 132
QNVO02000687.1 17982 1
QNVO02000688.1 18464 89
QNVO02000689.1 18792 62
QNVO02000690.1 18592 29
QNVO02000691.1 18898 12
QNVO02000692.1 18723 1
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QNVO02000694.1 18888 17
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QNVO02000696.1 18781 32
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QNVO02000706.1 18878 87
QNVO02000707.1 18966 35
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QNVO02000709.1 19035 647
QNVO02000710.1 18898 27
QNVO02000711.1 18602 57
QNVO02000712.1 19066 59
QNVO02000713.1 18466 184
QNVO02000714.1 19017 5
QNVO02000715.1 19182 17
QNVO02000716.1 19023 45
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QNVO02000719.1 14050 40
QNVO02000720.1 19074 17
QNVO02000721.1 19199 21
QNVO02000722.1 19104 54
QNVO02000723.1 19229 71
QNVO02000724.1 19321 7
QNVO02000725.1 19224 9
QNVO02000726.1 18933 79
QNVO02000727.1 19468 17
QNVO02000728.1 19333 77
QNVO02000729.1 19521 1
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QNVO02000731.1 19531 1
QNVO02000732.1 18714 64
QNVO02000733.1 19321 11
QNVO02000734.1 19626 30
QNVO02000735.1 19589 32
QNVO02000736.1 19477 22
QNVO02000737.1 19413 32
QNVO02000738.1 19316 25
QNVO02000739.1 19921 579
QNVO02000740.1 19279 254
QNVO02000741.1 26327 91
QNVO02000746.1 19622 16
QNVO02000747.1 19734 85
QNVO02000748.1 19629 107
QNVO02000749.1 19448 9
QNVO02000750.1 19615 13
QNVO02000751.1 19821 9
QNVO02000752.1 19395 1
QNVO02000753.1 19863 42
QNVO02000754.1 19786 32
QNVO02000755.1 19715 262
QNVO02000756.1 45369 11
QNVO02000757.1 19805 1
QNVO02000758.1 20031 9
QNVO02000759.1 19816 14
QNVO02000760.1 19778 365
QNVO02000761.1 20070 17
QNVO02000762.1 19785 90
QNVO02000763.1 19783 78
QNVO02000764.1 19793 29
QNVO02000765.1 19837 1
QNVO02000766.1 18955 46
QNVO02000767.1 17118 5
QNVO02000768.1 19901 89
QNVO02000769.1 20090 9
QNVO02000770.1 20077 53
QNVO02000771.1 19990 41
QNVO02000772.1 19954 151
QNVO02000773.1 20187 1
QNVO02000774.1 20086 67
QNVO02000775.1 20106 11
QNVO02000776.1 20216 65
QNVO02000777.1 20150 78
QNVO02000778.1 31988 270
QNVO02000779.1 20147 1
QNVO02000780.1 20246 44
QNVO02000781.1 20482 17
QNVO02000782.1 20534 1
QNVO02000783.1 20198 21
QNVO02000784.1 20467 1
QNVO02000785.1 20493 55
QNVO02000786.1 20408 95
QNVO02000787.1 20428 13
QNVO02000788.1 20368 89
QNVO02000789.1 16400 51
QNVO02000790.1 20362 9
QNVO02000791.1 20339 51
QNVO02000792.1 20634 35
QNVO02000793.1 20501 7
QNVO02000794.1 20574 147
QNVO02000795.1 20461 47
QNVO02000796.1 20246 30
QNVO02000797.1 20241 5
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Segment lengths

segments min max mean median
segments 21096154 10 1021950 140.85 10
global segment-length histogram

Files

Filename Size md5
Endo_ATAC_RPKM.bw 105.05 MB c70364194f744c0852d934b95390007e
genomic_resource.yaml 1.21 KB 24617d91842419f598436f80478477c3
statistics/