Resource

Id summary/zemke2023Conserved/pseudobulk_atac/macaque_m1/VIPcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in macaque_m1 for VIP cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: m1
  • cell_type: VIP
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_macaque_m1_VIP_atac_rpkm float

zemke2023Conserved_macaque_m1_VIP_atac_rpkm
Pseudo-bulk RPKM atac in macaque_m1 for VIP cell type
 HISTOGRAM FOR zemke2023Conserved_macaque_m1_VIP_atac_rpkm [0, 6.91e+04]
n
2,971,331,530
mean
3.13
sd
17.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2971331530 90860389
chr1 223616942 100.00% 7963019
chr2 196197964 100.00% 6109040
chr3 185288947 100.00% 5935490
chr4 169963040 100.00% 4919652
chr5 187317192 100.00% 4642501
chr6 179085566 100.00% 5138198
chr7 169868564 100.00% 5799359
chr8 145679320 100.00% 4251823
chr9 134124166 100.00% 4378345
chr10 99517758 100.00% 4147430
chr11 133066086 100.00% 4368760
chr12 130043856 100.00% 3948831
chr13 108737130 100.00% 3390564
chr14 128056306 100.00% 4434947
chr15 113283604 100.00% 3679792
chr16 79627064 100.00% 3481333
chr17 95433459 100.00% 2507129
chr18 74474043 100.00% 2141297
chr19 58315233 100.00% 2482900
chr20 77137495 100.00% 3053591
chrM 16564 100.00% 1607
chrX 153388924 100.00% 2454360
chrY 11753682 100.00% 120892
ML143117.1 738392 12234
ML143118.1 669983 6950
ML143119.1 862827 8605
ML143120.1 823856 4934
ML143121.1 1005795 5933
ML143122.1 733739 7837
ML143123.1 539197 14828
ML143124.1 1117261 9512
QNVO02000039.1 29490 676
QNVO02000040.1 29551 1316
QNVO02000041.1 31521 1081
QNVO02000042.1 35220 2387
QNVO02000043.1 43762 1626
QNVO02000044.1 43668 509
QNVO02000045.1 45264 264
QNVO02000046.1 74751 1775
QNVO02000047.1 75692 3412
QNVO02000048.1 64301 453
QNVO02000049.1 84426 3985
QNVO02000050.1 88635 4972
QNVO02000051.1 115549 5003
QNVO02000052.1 31739 1484
QNVO02000061.1 28076 1799
QNVO02000062.1 30974 831
QNVO02000063.1 34094 661
QNVO02000064.1 35836 97
QNVO02000065.1 36993 734
QNVO02000066.1 42603 469
QNVO02000067.1 44793 1796
QNVO02000068.1 36901 926
QNVO02000069.1 52625 763
QNVO02000070.1 65186 479
QNVO02000071.1 70089 1928
QNVO02000072.1 75026 658
QNVO02000073.1 86584 3493
QNVO02000074.1 67726 802
QNVO02000082.1 30461 622
QNVO02000083.1 34828 1885
QNVO02000084.1 34758 448
QNVO02000085.1 34993 1246
QNVO02000086.1 40200 469
QNVO02000087.1 35195 166
QNVO02000088.1 39160 1330
QNVO02000096.1 53508 1763
QNVO02000097.1 44853 657
QNVO02000098.1 55639 1621
QNVO02000099.1 65990 2878
QNVO02000100.1 57542 313
QNVO02000101.1 89870 757
QNVO02000102.1 123715 8277
QNVO02000113.1 32550 154
QNVO02000114.1 34793 840
QNVO02000115.1 44605 2038
QNVO02000116.1 36893 670
QNVO02000117.1 37575 923
QNVO02000118.1 37831 1148
QNVO02000119.1 37661 1525
QNVO02000120.1 44420 339
QNVO02000121.1 45281 133
QNVO02000122.1 46256 872
QNVO02000123.1 52830 2195
QNVO02000124.1 79630 3677
QNVO02000125.1 82543 924
QNVO02000126.1 51233 688
QNVO02000127.1 56227 2659
QNVO02000128.1 27245 629
QNVO02000129.1 29900 367
QNVO02000130.1 62273 2769
QNVO02000141.1 35411 601
QNVO02000142.1 36170 450
QNVO02000143.1 38712 618
QNVO02000144.1 39777 370
QNVO02000145.1 40306 876
QNVO02000146.1 39466 1919
QNVO02000147.1 52687 2140
QNVO02000148.1 53925 842
QNVO02000149.1 53926 1908
QNVO02000150.1 58262 1565
QNVO02000151.1 78748 4855
QNVO02000152.1 88419 3466
QNVO02000153.1 94627 3713
QNVO02000154.1 27791 1527
QNVO02000166.1 28177 149
QNVO02000167.1 33884 89
QNVO02000168.1 34745 117
QNVO02000169.1 50438 901
QNVO02000170.1 43437 1985
QNVO02000171.1 52552 2503
QNVO02000172.1 54058 108
QNVO02000173.1 54071 65
QNVO02000174.1 54349 526
QNVO02000175.1 63611 2217
QNVO02000176.1 65150 1229
QNVO02000177.1 65140 1115
QNVO02000178.1 65979 3474
QNVO02000179.1 63325 3380
QNVO02000180.1 53701 1738
QNVO02000181.1 27229 113
QNVO02000194.1 25947 157
QNVO02000195.1 181889 1990
QNVO02000196.1 31091 57
QNVO02000197.1 31166 23
QNVO02000198.1 31184 49
QNVO02000199.1 31250 121
QNVO02000200.1 43610 496
QNVO02000201.1 37523 417
QNVO02000202.1 38541 175
QNVO02000203.1 45093 223
QNVO02000204.1 46306 894
QNVO02000205.1 46347 2083
QNVO02000206.1 50375 618
QNVO02000207.1 59026 494
QNVO02000208.1 61686 1665
QNVO02000209.1 61907 538
QNVO02000210.1 165269 5125
QNVO02000211.1 27125 759
QNVO02000212.1 15354 23
QNVO02000216.1 32300 253
QNVO02000217.1 37145 1030
QNVO02000218.1 37664 374
QNVO02000219.1 41176 965
QNVO02000220.1 41974 1206
QNVO02000221.1 55554 1945
QNVO02000222.1 76316 1479
QNVO02000237.1 30450 557
QNVO02000238.1 39455 2017
QNVO02000239.1 41056 1682
QNVO02000240.1 44182 698
QNVO02000241.1 47076 709
QNVO02000242.1 53667 1365
QNVO02000243.1 60928 2512
QNVO02000244.1 61817 2117
QNVO02000245.1 66433 1925
QNVO02000246.1 71257 2248
QNVO02000247.1 76390 4020
QNVO02000248.1 78939 921
QNVO02000249.1 81779 596
QNVO02000250.1 89493 4227
QNVO02000251.1 90411 1285
QNVO02000252.1 134439 5577
QNVO02000253.1 58152 3040
QNVO02000254.1 124323 2686
QNVO02000255.1 183828 2735
QNVO02000259.1 26680 661
QNVO02000260.1 32580 874
QNVO02000261.1 33548 1442
QNVO02000262.1 37051 926
QNVO02000263.1 39993 1017
QNVO02000264.1 40438 1054
QNVO02000265.1 43990 421
QNVO02000266.1 48895 2895
QNVO02000267.1 50188 717
QNVO02000268.1 51363 2896
QNVO02000269.1 35879 1475
QNVO02000270.1 54860 1342
QNVO02000271.1 55541 2129
QNVO02000272.1 55582 438
QNVO02000273.1 59940 254
QNVO02000274.1 82305 2787
QNVO02000275.1 118135 5743
QNVO02000276.1 133025 2197
QNVO02000277.1 52076 477
QNVO02000278.1 116334 6378
QNVO02000279.1 65914 2244
QNVO02000293.1 26276 207
QNVO02000294.1 34752 357
QNVO02000295.1 36919 1105
QNVO02000296.1 64383 2412
QNVO02000297.1 30586 570
QNVO02000298.1 35391 527
QNVO02000299.1 40656 1013
QNVO02000300.1 51074 1075
QNVO02000301.1 48342 367
QNVO02000302.1 52951 646
QNVO02000303.1 86201 1790
QNVO02000304.1 92040 2898
QNVO02000305.1 52934 1691
QNVO02000306.1 54780 1320
QNVO02000315.1 25300 163
QNVO02000316.1 29349 690
QNVO02000317.1 29445 162
QNVO02000318.1 29713 384
QNVO02000319.1 36488 998
QNVO02000320.1 29788 603
QNVO02000321.1 42544 690
QNVO02000322.1 43837 617
QNVO02000323.1 51062 2376
QNVO02000324.1 54307 1144
QNVO02000325.1 54760 667
QNVO02000326.1 59741 2260
QNVO02000327.1 70296 866
QNVO02000328.1 72641 95
QNVO02000329.1 94715 2356
QNVO02000330.1 130268 5136
QNVO02000331.1 134158 4318
QNVO02000332.1 47814 1896
QNVO02000333.1 30503 466
QNVO02000334.1 1229889 5433
QNVO02000347.1 26875 293
QNVO02000348.1 27011 945
QNVO02000349.1 30037 773
QNVO02000350.1 34319 1461
QNVO02000351.1 36085 102
QNVO02000352.1 37498 790
QNVO02000353.1 45706 540
QNVO02000354.1 47138 1908
QNVO02000355.1 52252 1422
QNVO02000356.1 54371 436
QNVO02000357.1 54530 1601
QNVO02000358.1 54679 665
QNVO02000359.1 60005 614
QNVO02000360.1 75365 4112
QNVO02000361.1 85793 1163
QNVO02000362.1 90302 1379
QNVO02000371.1 26685 57
QNVO02000372.1 29791 146
QNVO02000373.1 32640 127
QNVO02000374.1 34222 353
QNVO02000375.1 35517 1274
QNVO02000376.1 37838 786
QNVO02000377.1 41651 319
QNVO02000378.1 41841 352
QNVO02000379.1 36351 407
QNVO02000380.1 48938 215
QNVO02000381.1 56442 582
QNVO02000382.1 68769 912
QNVO02000383.1 103593 813
QNVO02000384.1 185143 6095
QNVO02000385.1 39093 625
QNVO02000393.1 27603 770
QNVO02000394.1 28241 162
QNVO02000395.1 38876 463
QNVO02000396.1 39393 402
QNVO02000397.1 47332 346
QNVO02000398.1 58084 3978
QNVO02000399.1 57998 1134
QNVO02000400.1 61300 975
QNVO02000401.1 62126 1807
QNVO02000402.1 64491 3425
QNVO02000403.1 76406 1561
QNVO02000404.1 82950 2237
QNVO02000405.1 101334 1464
QNVO02000406.1 35732 878
QNVO02000424.1 27859 1455
QNVO02000425.1 28798 1800
QNVO02000426.1 31162 287
QNVO02000427.1 35826 292
QNVO02000428.1 41366 1810
QNVO02000429.1 46105 2551
QNVO02000430.1 51812 2111
QNVO02000431.1 53832 2642
QNVO02000432.1 55920 838
QNVO02000433.1 58999 1036
QNVO02000434.1 61446 2619
QNVO02000435.1 65479 1276
QNVO02000436.1 72206 2683
QNVO02000437.1 72836 2546
QNVO02000438.1 73247 1541
QNVO02000439.1 83758 4473
QNVO02000440.1 98820 2976
QNVO02000441.1 31768 211
QNVO02000458.1 32194 258
QNVO02000459.1 133312 3030
QNVO02000460.1 35273 421
QNVO02000461.1 35782 129
QNVO02000462.1 36168 368
QNVO02000463.1 38408 772
QNVO02000464.1 28604 557
QNVO02000465.1 45844 527
QNVO02000466.1 54299 525
QNVO02000467.1 59871 2623
QNVO02000468.1 66719 3334
QNVO02000469.1 70864 691
QNVO02000470.1 76376 1245
QNVO02000471.1 83314 3723
QNVO02000472.1 29721 1133
QNVO02000473.1 53832 1179
QNVO02000504.1 36031 1425
QNVO02000505.1 39733 595
QNVO02000506.1 47833 1729
QNVO02000507.1 47980 402
QNVO02000508.1 52082 853
QNVO02000509.1 54497 718
QNVO02000510.1 56716 1046
QNVO02000511.1 64642 3234
QNVO02000512.1 65546 3821
QNVO02000513.1 66711 882
QNVO02000514.1 77799 2190
QNVO02000515.1 85724 1567
QNVO02000516.1 104447 3244
QNVO02000517.1 29162 901
QNVO02000518.1 47554 665
QNVO02000519.1 16018 166
QNVO02000520.1 16072 58
QNVO02000521.1 15993 28
QNVO02000522.1 16197 59
QNVO02000523.1 16074 66
QNVO02000524.1 16042 238
QNVO02000525.1 16077 97
QNVO02000526.1 15853 154
QNVO02000527.1 15981 332
QNVO02000528.1 16244 46
QNVO02000529.1 32289 314
QNVO02000530.1 16160 104
QNVO02000531.1 16187 9
QNVO02000532.1 16363 29
QNVO02000533.1 16120 123
QNVO02000534.1 16055 52
QNVO02000535.1 16274 200
QNVO02000536.1 16364 17
QNVO02000537.1 16225 220
QNVO02000538.1 16356 173
QNVO02000539.1 16255 254
QNVO02000540.1 27321 544
QNVO02000541.1 16236 553
QNVO02000542.1 16356 142
QNVO02000543.1 16461 42
QNVO02000544.1 16455 782
QNVO02000545.1 16383 95
QNVO02000546.1 16352 621
QNVO02000547.1 15013 461
QNVO02000548.1 16280 256
QNVO02000549.1 16551 94
QNVO02000550.1 16444 56
QNVO02000551.1 56609 1079
QNVO02000552.1 16439 41
QNVO02000553.1 16412 330
QNVO02000554.1 16632 140
QNVO02000555.1 16299 29
QNVO02000556.1 16406 160
QNVO02000557.1 16596 54
QNVO02000558.1 16436 68
QNVO02000559.1 16779 1
QNVO02000560.1 16773 53
QNVO02000561.1 13224 68
QNVO02000562.1 14311 161
QNVO02000563.1 16475 144
QNVO02000564.1 16734 31
QNVO02000565.1 15042 634
QNVO02000566.1 16653 300
QNVO02000567.1 16729 91
QNVO02000568.1 16730 46
QNVO02000569.1 16370 50
QNVO02000570.1 16749 107
QNVO02000571.1 16651 130
QNVO02000572.1 16692 530
QNVO02000573.1 24869 219
QNVO02000574.1 16634 90
QNVO02000575.1 16844 173
QNVO02000576.1 16892 115
QNVO02000577.1 16406 114
QNVO02000578.1 16960 83
QNVO02000579.1 16925 63
QNVO02000580.1 16946 35
QNVO02000581.1 17035 43
QNVO02000582.1 16874 146
QNVO02000583.1 16960 73
QNVO02000584.1 15132 133
QNVO02000585.1 17048 61
QNVO02000586.1 16930 316
QNVO02000587.1 16900 391
QNVO02000588.1 16782 309
QNVO02000589.1 16399 315
QNVO02000590.1 17005 737
QNVO02000591.1 16760 1
QNVO02000592.1 16880 46
QNVO02000593.1 16975 192
QNVO02000594.1 13066 353
QNVO02000595.1 17407 378
QNVO02000596.1 17041 90
QNVO02000597.1 17431 48
QNVO02000598.1 17069 78
QNVO02000599.1 17372 38
QNVO02000600.1 25112 570
QNVO02000601.1 16450 389
QNVO02000602.1 16857 234
QNVO02000603.1 17184 85
QNVO02000604.1 17258 27
QNVO02000605.1 17214 230
QNVO02000606.1 14066 91
QNVO02000607.1 17331 23
QNVO02000608.1 17274 127
QNVO02000609.1 17243 671
QNVO02000610.1 17185 65
QNVO02000611.1 16695 159
QNVO02000612.1 17197 31
QNVO02000613.1 17342 39
QNVO02000614.1 17231 58
QNVO02000615.1 17498 47
QNVO02000616.1 17275 342
QNVO02000617.1 29983 325
QNVO02000618.1 17398 474
QNVO02000619.1 17418 102
QNVO02000620.1 17582 59
QNVO02000621.1 17409 106
QNVO02000622.1 17349 80
QNVO02000623.1 17478 87
QNVO02000624.1 17439 139
QNVO02000625.1 17634 62
QNVO02000626.1 17843 1
QNVO02000627.1 17802 1
QNVO02000628.1 31063 300
QNVO02000632.1 17707 50
QNVO02000633.1 9903 37
QNVO02000634.1 17583 206
QNVO02000635.1 17715 54
QNVO02000636.1 17761 138
QNVO02000637.1 17739 462
QNVO02000638.1 17822 47
QNVO02000639.1 17886 1
QNVO02000640.1 17447 38
QNVO02000641.1 17932 86
QNVO02000642.1 37152 169
QNVO02000643.1 17654 120
QNVO02000644.1 17964 87
QNVO02000645.1 17871 87
QNVO02000646.1 17895 96
QNVO02000647.1 18023 11
QNVO02000648.1 17833 67
QNVO02000649.1 17917 57
QNVO02000650.1 18018 606
QNVO02000651.1 17912 39
QNVO02000652.1 17825 545
QNVO02000653.1 45053 424
QNVO02000654.1 17844 79
QNVO02000655.1 25372 239
QNVO02000656.1 17956 298
QNVO02000657.1 18075 49
QNVO02000658.1 17870 145
QNVO02000659.1 18079 501
QNVO02000660.1 18166 81
QNVO02000661.1 18142 332
QNVO02000662.1 18128 1
QNVO02000663.1 18335 1
QNVO02000664.1 30841 66
QNVO02000665.1 18029 171
QNVO02000666.1 18339 49
QNVO02000667.1 18298 1
QNVO02000668.1 17970 77
QNVO02000669.1 4886 5
QNVO02000670.1 17870 33
QNVO02000671.1 18327 369
QNVO02000672.1 18353 30
QNVO02000673.1 18435 40
QNVO02000674.1 18512 60
QNVO02000675.1 21919 87
QNVO02000676.1 18498 52
QNVO02000677.1 18217 221
QNVO02000678.1 18414 79
QNVO02000679.1 18158 1180
QNVO02000680.1 18591 5
QNVO02000681.1 18512 104
QNVO02000682.1 18667 59
QNVO02000683.1 18610 1
QNVO02000684.1 18647 34
QNVO02000685.1 18566 1071
QNVO02000686.1 13685 268
QNVO02000687.1 17982 1
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QNVO02000689.1 18792 247
QNVO02000690.1 18592 27
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QNVO02000692.1 18723 1
QNVO02000693.1 18775 9
QNVO02000694.1 18888 14
QNVO02000695.1 18851 52
QNVO02000696.1 18781 70
QNVO02000697.1 17329 558
QNVO02000698.1 18779 165
QNVO02000699.1 18436 106
QNVO02000700.1 19001 40
QNVO02000701.1 19096 27
QNVO02000702.1 19092 53
QNVO02000703.1 19055 16
QNVO02000704.1 18522 113
QNVO02000705.1 19175 33
QNVO02000706.1 18878 235
QNVO02000707.1 18966 71
QNVO02000708.1 30668 123
QNVO02000709.1 19035 1289
QNVO02000710.1 18898 208
QNVO02000711.1 18602 346
QNVO02000712.1 19066 120
QNVO02000713.1 18466 431
QNVO02000714.1 19017 94
QNVO02000715.1 19182 89
QNVO02000716.1 19023 149
QNVO02000717.1 19094 9
QNVO02000718.1 19115 147
QNVO02000719.1 14050 116
QNVO02000720.1 19074 244
QNVO02000721.1 19199 35
QNVO02000722.1 19104 85
QNVO02000723.1 19229 203
QNVO02000724.1 19321 76
QNVO02000725.1 19224 122
QNVO02000726.1 18933 303
QNVO02000727.1 19468 38
QNVO02000728.1 19333 311
QNVO02000729.1 19521 45
QNVO02000730.1 23168 309
QNVO02000731.1 19531 34
QNVO02000732.1 18714 302
QNVO02000733.1 19321 458
QNVO02000734.1 19626 67
QNVO02000735.1 19589 44
QNVO02000736.1 19477 67
QNVO02000737.1 19413 54
QNVO02000738.1 19316 74
QNVO02000739.1 19921 1128
QNVO02000740.1 19279 636
QNVO02000741.1 26327 267
QNVO02000746.1 19622 15
QNVO02000747.1 19734 522
QNVO02000748.1 19629 246
QNVO02000749.1 19448 185
QNVO02000750.1 19615 49
QNVO02000751.1 19821 51
QNVO02000752.1 19395 9
QNVO02000753.1 19863 175
QNVO02000754.1 19786 63
QNVO02000755.1 19715 888
QNVO02000756.1 45369 49
QNVO02000757.1 19805 1
QNVO02000758.1 20031 9
QNVO02000759.1 19816 61
QNVO02000760.1 19778 754
QNVO02000761.1 20070 13
QNVO02000762.1 19785 390
QNVO02000763.1 19783 190
QNVO02000764.1 19793 116
QNVO02000765.1 19837 30
QNVO02000766.1 18955 229
QNVO02000767.1 17118 80
QNVO02000768.1 19901 435
QNVO02000769.1 20090 21
QNVO02000770.1 20077 97
QNVO02000771.1 19990 254
QNVO02000772.1 19954 422
QNVO02000773.1 20187 1
QNVO02000774.1 20086 261
QNVO02000775.1 20106 28
QNVO02000776.1 20216 141
QNVO02000777.1 20150 235
QNVO02000778.1 31988 816
QNVO02000779.1 20147 13
QNVO02000780.1 20246 109
QNVO02000781.1 20482 60
QNVO02000782.1 20534 27
QNVO02000783.1 20198 33
QNVO02000784.1 20467 1
QNVO02000785.1 20493 122
QNVO02000786.1 20408 518
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Segment lengths

segments min max mean median
segments 90860389 10 1014310 32.7 10
global segment-length histogram

Files

Filename Size md5
VIP_ATAC_RPKM.bw 468.29 MB 453660b8f6961a4752b57fb943d66994
genomic_resource.yaml 1.21 KB 3707980e928f17b8cbaed031746a5e7f
statistics/