Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/ASCcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for ASC cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: ASC
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_ASC_atac_rpkm float

zemke2023Conserved_mouse_mop_ASC_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for ASC cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_ASC_atac_rpkm [0, 1.35e+05]
n
2,730,871,774
mean
3.54
sd
25.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 114297377
chr1 195471971 100.00% 8246416
chr2 182113224 100.00% 8596702
chr3 160039680 100.00% 6325461
chr4 156508116 100.00% 7015371
chr5 151834684 100.00% 6902033
chr6 149736546 100.00% 6426014
chr7 145441459 100.00% 6414536
chr8 129401213 100.00% 5847393
chr9 124595110 100.00% 6224680
chr10 130694993 100.00% 5560652
chr11 122082543 100.00% 6549200
chr12 120129022 100.00% 5203514
chr13 120421639 100.00% 5149816
chr14 124902244 100.00% 5233589
chr15 104043685 100.00% 4646566
chr16 98207768 100.00% 4295864
chr17 94987271 100.00% 4420646
chr18 90702639 100.00% 4018908
chr19 61431566 100.00% 2964359
chrM 16299 100.00% 1619
chrX 171031299 100.00% 3455914
chrY 91744698 100.00% 693350
GL456210.1 169725 100.00% 3579
GL456211.1 241735 100.00% 6487
GL456212.1 153618 100.00% 4548
GL456213.1 39340 100.00% 2100
GL456216.1 66673 100.00% 2809
GL456219.1 175968 100.00% 1384
GL456221.1 206961 100.00% 5196
GL456233.1 336933 100.00% 6821
GL456239.1 40056 100.00% 1981
GL456350.1 227966 100.00% 4025
GL456354.1 195993 100.00% 2233
GL456359.1 22974 100.00% 931
GL456360.1 31704 100.00% 992
GL456366.1 47073 100.00% 1657
GL456367.1 42057 100.00% 408
GL456368.1 20208 100.00% 292
GL456370.1 26764 100.00% 1111
GL456372.1 28664 100.00% 493
GL456378.1 31602 100.00% 581
GL456379.1 72385 100.00% 773
GL456381.1 25871 100.00% 954
GL456382.1 23158 100.00% 180
GL456383.1 38659 100.00% 1333
GL456385.1 35240 100.00% 453
GL456387.1 24685 100.00% 1364
GL456389.1 28772 100.00% 885
GL456390.1 24668 100.00% 817
GL456392.1 23629 100.00% 983
GL456393.1 55711 100.00% 2812
GL456394.1 24323 100.00% 513
GL456396.1 21240 100.00% 740
JH584292.1 14945 100.00% 420
JH584293.1 207968 100.00% 5056
JH584294.1 191905 100.00% 4878
JH584295.1 1976 100.00% 178
JH584296.1 199368 100.00% 2255
JH584297.1 205776 100.00% 2173
JH584298.1 184189 100.00% 1838
JH584299.1 953012 100.00% 9941
JH584300.1 182347 100.00% 2374
JH584301.1 259875 100.00% 2174
JH584302.1 155838 100.00% 1622
JH584303.1 158099 100.00% 1919
JH584304.1 114452 100.00% 10511

Segment lengths

segments min max mean median
segments 114297377 10 3100050 23.89 10
global segment-length histogram

Files

Filename Size md5
ASC_ATAC_RPKM.bw 606.71 MB c6dbf510fc897de426acdf513ed6be9d
genomic_resource.yaml 1.2 KB 4ff97f497a0646b22cdac1b8a6025e9f
statistics/