Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/L2_3_ITcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for L2_3_IT cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L2_3_IT
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L2_3_IT_atac_rpkm float

zemke2023Conserved_mouse_mop_L2_3_IT_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for L2_3_IT cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L2_3_IT_atac_rpkm [0, 9.6e+04]
n
2,730,871,774
mean
3.58
sd
16.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 225417511
chr1 195471971 100.00% 16874977
chr2 182113224 100.00% 15831183
chr3 160039680 100.00% 13612561
chr4 156508116 100.00% 13331749
chr5 151834684 100.00% 13102673
chr6 149736546 100.00% 12877400
chr7 145441459 100.00% 11888072
chr8 129401213 100.00% 11132909
chr9 124595110 100.00% 10810058
chr10 130694993 100.00% 11232509
chr11 122082543 100.00% 10736615
chr12 120129022 100.00% 10194056
chr13 120421639 100.00% 10245959
chr14 124902244 100.00% 10610675
chr15 104043685 100.00% 8899229
chr16 98207768 100.00% 8338481
chr17 94987271 100.00% 7959388
chr18 90702639 100.00% 7710039
chr19 61431566 100.00% 5141038
chrM 16299 100.00% 1628
chrX 171031299 100.00% 11803075
chrY 91744698 100.00% 2755021
GL456210.1 169725 100.00% 13672
GL456211.1 241735 100.00% 19753
GL456212.1 153618 100.00% 12313
GL456213.1 39340 100.00% 3766
GL456216.1 66673 100.00% 5408
GL456219.1 175968 100.00% 8199
GL456221.1 206961 100.00% 16676
GL456233.1 336933 100.00% 21398
GL456239.1 40056 100.00% 3663
GL456350.1 227966 100.00% 15048
GL456354.1 195993 100.00% 11420
GL456359.1 22974 100.00% 1741
GL456360.1 31704 100.00% 2462
GL456366.1 47073 100.00% 3367
GL456367.1 42057 100.00% 1969
GL456368.1 20208 100.00% 1252
GL456370.1 26764 100.00% 1740
GL456372.1 28664 100.00% 1898
GL456378.1 31602 100.00% 2227
GL456379.1 72385 100.00% 3914
GL456381.1 25871 100.00% 1847
GL456382.1 23158 100.00% 954
GL456383.1 38659 100.00% 2770
GL456385.1 35240 100.00% 2247
GL456387.1 24685 100.00% 2030
GL456389.1 28772 100.00% 1956
GL456390.1 24668 100.00% 1235
GL456392.1 23629 100.00% 1797
GL456393.1 55711 100.00% 4727
GL456394.1 24323 100.00% 1332
GL456396.1 21240 100.00% 1369
JH584292.1 14945 100.00% 1050
JH584293.1 207968 100.00% 13990
JH584294.1 191905 100.00% 14733
JH584295.1 1976 100.00% 196
JH584296.1 199368 100.00% 11070
JH584297.1 205776 100.00% 10845
JH584298.1 184189 100.00% 9485
JH584299.1 953012 100.00% 52375
JH584300.1 182347 100.00% 8038
JH584301.1 259875 100.00% 8059
JH584302.1 155838 100.00% 5948
JH584303.1 158099 100.00% 6970
JH584304.1 114452 100.00% 11307

Segment lengths

segments min max mean median
segments 225417511 10 3100000 12.11 10
global segment-length histogram

Files

Filename Size md5
L2_3_IT_ATAC_RPKM.bw 1.29 GB 310bb0e40374fb884259648839429cbb
genomic_resource.yaml 1.22 KB 7d90bf1b9e663e860a3d03b90c2b0a9c
statistics/