Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/L4_5_ITcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for L4_5_IT cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L4_5_IT
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L4_5_IT_atac_rpkm float

zemke2023Conserved_mouse_mop_L4_5_IT_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for L4_5_IT cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L4_5_IT_atac_rpkm [0, 1e+05]
n
2,730,871,774
mean
3.58
sd
17.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 204119444
chr1 195471971 100.00% 15293218
chr2 182113224 100.00% 14502327
chr3 160039680 100.00% 12195505
chr4 156508116 100.00% 12179992
chr5 151834684 100.00% 11974292
chr6 149736546 100.00% 11660395
chr7 145441459 100.00% 10947927
chr8 129401213 100.00% 10161923
chr9 124595110 100.00% 9967327
chr10 130694993 100.00% 10206263
chr11 122082543 100.00% 9955198
chr12 120129022 100.00% 9258862
chr13 120421639 100.00% 9312145
chr14 124902244 100.00% 9560214
chr15 104043685 100.00% 8122043
chr16 98207768 100.00% 7562310
chr17 94987271 100.00% 7298982
chr18 90702639 100.00% 7017682
chr19 61431566 100.00% 4718417
chrM 16299 100.00% 1623
chrX 171031299 100.00% 9547524
chrY 91744698 100.00% 2393369
GL456210.1 169725 100.00% 12069
GL456211.1 241735 100.00% 17712
GL456212.1 153618 100.00% 11218
GL456213.1 39340 100.00% 3626
GL456216.1 66673 100.00% 4934
GL456219.1 175968 100.00% 6845
GL456221.1 206961 100.00% 14934
GL456233.1 336933 100.00% 16942
GL456239.1 40056 100.00% 3469
GL456350.1 227966 100.00% 12472
GL456354.1 195993 100.00% 8957
GL456359.1 22974 100.00% 1534
GL456360.1 31704 100.00% 2042
GL456366.1 47073 100.00% 2925
GL456367.1 42057 100.00% 1814
GL456368.1 20208 100.00% 1067
GL456370.1 26764 100.00% 1630
GL456372.1 28664 100.00% 1654
GL456378.1 31602 100.00% 1988
GL456379.1 72385 100.00% 3557
GL456381.1 25871 100.00% 1764
GL456382.1 23158 100.00% 752
GL456383.1 38659 100.00% 2520
GL456385.1 35240 100.00% 1914
GL456387.1 24685 100.00% 1983
GL456389.1 28772 100.00% 1794
GL456390.1 24668 100.00% 1194
GL456392.1 23629 100.00% 1635
GL456393.1 55711 100.00% 4497
GL456394.1 24323 100.00% 1209
GL456396.1 21240 100.00% 1169
JH584292.1 14945 100.00% 953
JH584293.1 207968 100.00% 12225
JH584294.1 191905 100.00% 13116
JH584295.1 1976 100.00% 194
JH584296.1 199368 100.00% 8680
JH584297.1 205776 100.00% 8660
JH584298.1 184189 100.00% 7768
JH584299.1 953012 100.00% 42575
JH584300.1 182347 100.00% 7093
JH584301.1 259875 100.00% 6588
JH584302.1 155838 100.00% 5243
JH584303.1 158099 100.00% 5779
JH584304.1 114452 100.00% 11212

Segment lengths

segments min max mean median
segments 204119444 10 3100020 13.38 10
global segment-length histogram

Files

Filename Size md5
L4_5_IT_ATAC_RPKM.bw 1.13 GB c73222ab7d1d1384fab372cb9f284d5c
genomic_resource.yaml 1.22 KB c95e8bbde2a002a6030c4162fad9391d
statistics/