Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/L5_ETcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for L5_ET cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L5_ET
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L5_ET_atac_rpkm float

zemke2023Conserved_mouse_mop_L5_ET_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for L5_ET cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L5_ET_atac_rpkm [0, 8.84e+04]
n
2,730,871,774
mean
3.63
sd
14.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 172225964
chr1 195471971 100.00% 13183481
chr2 182113224 100.00% 12626225
chr3 160039680 100.00% 10351741
chr4 156508116 100.00% 10415920
chr5 151834684 100.00% 10336949
chr6 149736546 100.00% 10070405
chr7 145441459 100.00% 8906296
chr8 129401213 100.00% 8795456
chr9 124595110 100.00% 8661117
chr10 130694993 100.00% 8816543
chr11 122082543 100.00% 8810937
chr12 120129022 100.00% 7784023
chr13 120421639 100.00% 7938359
chr14 124902244 100.00% 8175193
chr15 104043685 100.00% 6996076
chr16 98207768 100.00% 6488358
chr17 94987271 100.00% 6159990
chr18 90702639 100.00% 6042944
chr19 61431566 100.00% 4089003
chrM 16299 100.00% 1614
chrX 171031299 100.00% 6831998
chrY 91744698 100.00% 569131
GL456210.1 169725 100.00% 8012
GL456211.1 241735 100.00% 12587
GL456212.1 153618 100.00% 8029
GL456213.1 39340 100.00% 3370
GL456216.1 66673 100.00% 3578
GL456219.1 175968 100.00% 2843
GL456221.1 206961 100.00% 10617
GL456233.1 336933 100.00% 10840
GL456239.1 40056 100.00% 2742
GL456350.1 227966 100.00% 9329
GL456354.1 195993 100.00% 4541
GL456359.1 22974 100.00% 947
GL456360.1 31704 100.00% 1346
GL456366.1 47073 100.00% 2132
GL456367.1 42057 100.00% 891
GL456368.1 20208 100.00% 499
GL456370.1 26764 100.00% 1206
GL456372.1 28664 100.00% 1132
GL456378.1 31602 100.00% 1280
GL456379.1 72385 100.00% 1790
GL456381.1 25871 100.00% 1281
GL456382.1 23158 100.00% 176
GL456383.1 38659 100.00% 2062
GL456385.1 35240 100.00% 964
GL456387.1 24685 100.00% 1638
GL456389.1 28772 100.00% 1244
GL456390.1 24668 100.00% 1078
GL456392.1 23629 100.00% 1338
GL456393.1 55711 100.00% 3706
GL456394.1 24323 100.00% 682
GL456396.1 21240 100.00% 965
JH584292.1 14945 100.00% 568
JH584293.1 207968 100.00% 9677
JH584294.1 191905 100.00% 10150
JH584295.1 1976 100.00% 191
JH584296.1 199368 100.00% 4442
JH584297.1 205776 100.00% 4215
JH584298.1 184189 100.00% 3842
JH584299.1 953012 100.00% 21536
JH584300.1 182347 100.00% 1440
JH584301.1 259875 100.00% 1652
JH584302.1 155838 100.00% 1369
JH584303.1 158099 100.00% 1372
JH584304.1 114452 100.00% 10906

Segment lengths

segments min max mean median
segments 172225964 10 3100010 15.86 10
global segment-length histogram

Files

Filename Size md5
L5_ET_ATAC_RPKM.bw 944.1 MB 1cc2995ce950ea7e7731d2bb39516f94
genomic_resource.yaml 1.21 KB fdbfaa27871e55b81244a7238474393d
statistics/