Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/L5_ITcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for L5_IT cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L5_IT
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L5_IT_atac_rpkm float

zemke2023Conserved_mouse_mop_L5_IT_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for L5_IT cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L5_IT_atac_rpkm [0, 9.18e+04]
n
2,730,871,774
mean
3.6
sd
15.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 194119264
chr1 195471971 100.00% 14727796
chr2 182113224 100.00% 13955748
chr3 160039680 100.00% 11682528
chr4 156508116 100.00% 11631484
chr5 151834684 100.00% 11511472
chr6 149736546 100.00% 11226268
chr7 145441459 100.00% 10165455
chr8 129401213 100.00% 9754217
chr9 124595110 100.00% 9577966
chr10 130694993 100.00% 9820074
chr11 122082543 100.00% 9638398
chr12 120129022 100.00% 8804739
chr13 120421639 100.00% 8913784
chr14 124902244 100.00% 9180009
chr15 104043685 100.00% 7809101
chr16 98207768 100.00% 7223832
chr17 94987271 100.00% 6916233
chr18 90702639 100.00% 6737949
chr19 61431566 100.00% 4520300
chrM 16299 100.00% 1621
chrX 171031299 100.00% 8713999
chrY 91744698 100.00% 1369546
GL456210.1 169725 100.00% 10932
GL456211.1 241735 100.00% 16529
GL456212.1 153618 100.00% 10447
GL456213.1 39340 100.00% 3525
GL456216.1 66673 100.00% 4454
GL456219.1 175968 100.00% 4722
GL456221.1 206961 100.00% 13963
GL456233.1 336933 100.00% 14533
GL456239.1 40056 100.00% 3303
GL456350.1 227966 100.00% 10487
GL456354.1 195993 100.00% 7409
GL456359.1 22974 100.00% 1262
GL456360.1 31704 100.00% 1712
GL456366.1 47073 100.00% 2706
GL456367.1 42057 100.00% 1333
GL456368.1 20208 100.00% 846
GL456370.1 26764 100.00% 1520
GL456372.1 28664 100.00% 1547
GL456378.1 31602 100.00% 1645
GL456379.1 72385 100.00% 2025
GL456381.1 25871 100.00% 1611
GL456382.1 23158 100.00% 571
GL456383.1 38659 100.00% 2413
GL456385.1 35240 100.00% 1594
GL456387.1 24685 100.00% 1905
GL456389.1 28772 100.00% 1628
GL456390.1 24668 100.00% 1165
GL456392.1 23629 100.00% 1568
GL456393.1 55711 100.00% 4329
GL456394.1 24323 100.00% 1025
GL456396.1 21240 100.00% 1123
JH584292.1 14945 100.00% 757
JH584293.1 207968 100.00% 10510
JH584294.1 191905 100.00% 10969
JH584295.1 1976 100.00% 197
JH584296.1 199368 100.00% 7206
JH584297.1 205776 100.00% 7156
JH584298.1 184189 100.00% 6265
JH584299.1 953012 100.00% 33982
JH584300.1 182347 100.00% 3882
JH584301.1 259875 100.00% 4276
JH584302.1 155838 100.00% 3196
JH584303.1 158099 100.00% 3374
JH584304.1 114452 100.00% 11143

Segment lengths

segments min max mean median
segments 194119264 10 3100050 14.07 10
global segment-length histogram

Files

Filename Size md5
L5_IT_ATAC_RPKM.bw 1.05 GB f65a1c87b302bbf6b11dc19f4d92e144
genomic_resource.yaml 1.21 KB 285577c33830066f5aadabab0e1f164b
statistics/