Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/L6_CTcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for L6_CT cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L6_CT
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L6_CT_atac_rpkm float

zemke2023Conserved_mouse_mop_L6_CT_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for L6_CT cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L6_CT_atac_rpkm [0, 9.93e+04]
n
2,730,871,774
mean
3.59
sd
17.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 202784720
chr1 195471971 100.00% 15319145
chr2 182113224 100.00% 14512148
chr3 160039680 100.00% 12125836
chr4 156508116 100.00% 12159788
chr5 151834684 100.00% 11958051
chr6 149736546 100.00% 11643875
chr7 145441459 100.00% 10737797
chr8 129401213 100.00% 10161876
chr9 124595110 100.00% 9955186
chr10 130694993 100.00% 10216754
chr11 122082543 100.00% 9986203
chr12 120129022 100.00% 9224976
chr13 120421639 100.00% 9311243
chr14 124902244 100.00% 9553535
chr15 104043685 100.00% 8192651
chr16 98207768 100.00% 7520022
chr17 94987271 100.00% 7199593
chr18 90702639 100.00% 7052645
chr19 61431566 100.00% 4682722
chrM 16299 100.00% 1622
chrX 171031299 100.00% 9375346
chrY 91744698 100.00% 1625246
GL456210.1 169725 100.00% 11844
GL456211.1 241735 100.00% 17580
GL456212.1 153618 100.00% 10938
GL456213.1 39340 100.00% 3602
GL456216.1 66673 100.00% 4797
GL456219.1 175968 100.00% 5878
GL456221.1 206961 100.00% 14852
GL456233.1 336933 100.00% 17858
GL456239.1 40056 100.00% 3372
GL456350.1 227966 100.00% 13584
GL456354.1 195993 100.00% 8563
GL456359.1 22974 100.00% 1474
GL456360.1 31704 100.00% 2053
GL456366.1 47073 100.00% 2938
GL456367.1 42057 100.00% 1420
GL456368.1 20208 100.00% 1062
GL456370.1 26764 100.00% 1595
GL456372.1 28664 100.00% 1660
GL456378.1 31602 100.00% 1926
GL456379.1 72385 100.00% 2652
GL456381.1 25871 100.00% 1690
GL456382.1 23158 100.00% 609
GL456383.1 38659 100.00% 2427
GL456385.1 35240 100.00% 1790
GL456387.1 24685 100.00% 1941
GL456389.1 28772 100.00% 1721
GL456390.1 24668 100.00% 1170
GL456392.1 23629 100.00% 1667
GL456393.1 55711 100.00% 4411
GL456394.1 24323 100.00% 1137
GL456396.1 21240 100.00% 1225
JH584292.1 14945 100.00% 895
JH584293.1 207968 100.00% 13089
JH584294.1 191905 100.00% 13950
JH584295.1 1976 100.00% 194
JH584296.1 199368 100.00% 8285
JH584297.1 205776 100.00% 7921
JH584298.1 184189 100.00% 7297
JH584299.1 953012 100.00% 38531
JH584300.1 182347 100.00% 5070
JH584301.1 259875 100.00% 4990
JH584302.1 155838 100.00% 3606
JH584303.1 158099 100.00% 3955
JH584304.1 114452 100.00% 11241

Segment lengths

segments min max mean median
segments 202784720 10 3100030 13.47 10
global segment-length histogram

Files

Filename Size md5
L6_CT_ATAC_RPKM.bw 1.13 GB c470c7f53ee1df4fbb8a236f2f444c10
genomic_resource.yaml 1.21 KB 599aeb8136a824e819d665da6ea101f8
statistics/