Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/L6_ITcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for L6_IT cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L6_IT
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L6_IT_atac_rpkm float

zemke2023Conserved_mouse_mop_L6_IT_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for L6_IT cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L6_IT_atac_rpkm [0, 9.69e+04]
n
2,730,871,774
mean
3.6
sd
16.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 171240899
chr1 195471971 100.00% 13022804
chr2 182113224 100.00% 12523558
chr3 160039680 100.00% 10152117
chr4 156508116 100.00% 10369409
chr5 151834684 100.00% 10355758
chr6 149736546 100.00% 9946375
chr7 145441459 100.00% 8934596
chr8 129401213 100.00% 8673622
chr9 124595110 100.00% 8605723
chr10 130694993 100.00% 8716664
chr11 122082543 100.00% 8783883
chr12 120129022 100.00% 7803808
chr13 120421639 100.00% 7907363
chr14 124902244 100.00% 8077090
chr15 104043685 100.00% 7032724
chr16 98207768 100.00% 6382850
chr17 94987271 100.00% 6096575
chr18 90702639 100.00% 5995065
chr19 61431566 100.00% 4032406
chrM 16299 100.00% 1619
chrX 171031299 100.00% 6730703
chrY 91744698 100.00% 905702
GL456210.1 169725 100.00% 8972
GL456211.1 241735 100.00% 14087
GL456212.1 153618 100.00% 8787
GL456213.1 39340 100.00% 3415
GL456216.1 66673 100.00% 3858
GL456219.1 175968 100.00% 3281
GL456221.1 206961 100.00% 11651
GL456233.1 336933 100.00% 11355
GL456239.1 40056 100.00% 2941
GL456350.1 227966 100.00% 9074
GL456354.1 195993 100.00% 5426
GL456359.1 22974 100.00% 945
GL456360.1 31704 100.00% 1485
GL456366.1 47073 100.00% 2183
GL456367.1 42057 100.00% 926
GL456368.1 20208 100.00% 670
GL456370.1 26764 100.00% 1278
GL456372.1 28664 100.00% 1250
GL456378.1 31602 100.00% 1288
GL456379.1 72385 100.00% 1501
GL456381.1 25871 100.00% 1393
GL456382.1 23158 100.00% 298
GL456383.1 38659 100.00% 2014
GL456385.1 35240 100.00% 1291
GL456387.1 24685 100.00% 1725
GL456389.1 28772 100.00% 1315
GL456390.1 24668 100.00% 1063
GL456392.1 23629 100.00% 1320
GL456393.1 55711 100.00% 3771
GL456394.1 24323 100.00% 761
GL456396.1 21240 100.00% 976
JH584292.1 14945 100.00% 642
JH584293.1 207968 100.00% 9254
JH584294.1 191905 100.00% 9967
JH584295.1 1976 100.00% 190
JH584296.1 199368 100.00% 5388
JH584297.1 205776 100.00% 5177
JH584298.1 184189 100.00% 4732
JH584299.1 953012 100.00% 24566
JH584300.1 182347 100.00% 2419
JH584301.1 259875 100.00% 2666
JH584302.1 155838 100.00% 2166
JH584303.1 158099 100.00% 2039
JH584304.1 114452 100.00% 10979

Segment lengths

segments min max mean median
segments 171240899 10 3100170 15.95 10
global segment-length histogram

Files

Filename Size md5
L6_IT_ATAC_RPKM.bw 935.16 MB ef53a3ed02b3556a250f305a07b0e449
genomic_resource.yaml 1.21 KB 800e1acf26a201b4a375923f9740ffcf
statistics/