Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/L6bcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for L6b cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L6b
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L6b_atac_rpkm float

zemke2023Conserved_mouse_mop_L6b_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for L6b cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L6b_atac_rpkm [0, 9.8e+04]
n
2,730,871,774
mean
3.61
sd
16.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 76268655
chr1 195471971 100.00% 5750332
chr2 182113224 100.00% 5768360
chr3 160039680 100.00% 4199461
chr4 156508116 100.00% 4769270
chr5 151834684 100.00% 4799099
chr6 149736546 100.00% 4356558
chr7 145441459 100.00% 4198777
chr8 129401213 100.00% 3992511
chr9 124595110 100.00% 4084352
chr10 130694993 100.00% 3824765
chr11 122082543 100.00% 4373236
chr12 120129022 100.00% 3404033
chr13 120421639 100.00% 3466741
chr14 124902244 100.00% 3489829
chr15 104043685 100.00% 3313995
chr16 98207768 100.00% 2801742
chr17 94987271 100.00% 2874538
chr18 90702639 100.00% 2638748
chr19 61431566 100.00% 1891176
chrM 16299 100.00% 1580
chrX 171031299 100.00% 2046341
chrY 91744698 100.00% 157793
GL456210.1 169725 100.00% 2400
GL456211.1 241735 100.00% 4563
GL456212.1 153618 100.00% 3198
GL456213.1 39340 100.00% 2041
GL456216.1 66673 100.00% 1826
GL456219.1 175968 100.00% 568
GL456221.1 206961 100.00% 3790
GL456233.1 336933 100.00% 2963
GL456239.1 40056 100.00% 1437
GL456350.1 227966 100.00% 3080
GL456354.1 195993 100.00% 1268
GL456359.1 22974 100.00% 327
GL456360.1 31704 100.00% 391
GL456366.1 47073 100.00% 618
GL456367.1 42057 100.00% 217
GL456368.1 20208 100.00% 142
GL456370.1 26764 100.00% 634
GL456372.1 28664 100.00% 274
GL456378.1 31602 100.00% 683
GL456379.1 72385 100.00% 229
GL456381.1 25871 100.00% 530
GL456382.1 23158 100.00% 74
GL456383.1 38659 100.00% 831
GL456385.1 35240 100.00% 237
GL456387.1 24685 100.00% 821
GL456389.1 28772 100.00% 523
GL456390.1 24668 100.00% 589
GL456392.1 23629 100.00% 590
GL456393.1 55711 100.00% 1968
GL456394.1 24323 100.00% 268
GL456396.1 21240 100.00% 502
JH584292.1 14945 100.00% 178
JH584293.1 207968 100.00% 4105
JH584294.1 191905 100.00% 3474
JH584295.1 1976 100.00% 162
JH584296.1 199368 100.00% 1202
JH584297.1 205776 100.00% 1248
JH584298.1 184189 100.00% 1042
JH584299.1 953012 100.00% 5459
JH584300.1 182347 100.00% 516
JH584301.1 259875 100.00% 471
JH584302.1 155838 100.00% 338
JH584303.1 158099 100.00% 341
JH584304.1 114452 100.00% 9300

Segment lengths

segments min max mean median
segments 76268655 10 3100180 35.81 10
global segment-length histogram

Files

Filename Size md5
L6b_ATAC_RPKM.bw 388.12 MB 51eeeb85562b0bf013ecaa6d1915a5eb
genomic_resource.yaml 1.2 KB 503564766b2c89a8727a5db8bdb5ef14
statistics/