Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/LAMP5content_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for LAMP5 cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: LAMP5
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_LAMP5_atac_rpkm float

zemke2023Conserved_mouse_mop_LAMP5_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for LAMP5 cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_LAMP5_atac_rpkm [0, 1.07e+05]
n
2,730,871,774
mean
3.59
sd
18.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 96636596
chr1 195471971 100.00% 7199274
chr2 182113224 100.00% 7348109
chr3 160039680 100.00% 5262097
chr4 156508116 100.00% 5893538
chr5 151834684 100.00% 6052119
chr6 149736546 100.00% 5486799
chr7 145441459 100.00% 5366759
chr8 129401213 100.00% 5052345
chr9 124595110 100.00% 5248226
chr10 130694993 100.00% 4917478
chr11 122082543 100.00% 5541355
chr12 120129022 100.00% 4326982
chr13 120421639 100.00% 4407116
chr14 124902244 100.00% 4383587
chr15 104043685 100.00% 4049088
chr16 98207768 100.00% 3641834
chr17 94987271 100.00% 3746762
chr18 90702639 100.00% 3393958
chr19 61431566 100.00% 2376231
chrM 16299 100.00% 1602
chrX 171031299 100.00% 2731865
chrY 91744698 100.00% 144738
GL456210.1 169725 100.00% 2696
GL456211.1 241735 100.00% 4790
GL456212.1 153618 100.00% 3141
GL456213.1 39340 100.00% 2176
GL456216.1 66673 100.00% 2046
GL456219.1 175968 100.00% 624
GL456221.1 206961 100.00% 3636
GL456233.1 336933 100.00% 3053
GL456239.1 40056 100.00% 1478
GL456350.1 227966 100.00% 2646
GL456354.1 195993 100.00% 1132
GL456359.1 22974 100.00% 399
GL456360.1 31704 100.00% 434
GL456366.1 47073 100.00% 837
GL456367.1 42057 100.00% 210
GL456368.1 20208 100.00% 120
GL456370.1 26764 100.00% 600
GL456372.1 28664 100.00% 361
GL456378.1 31602 100.00% 286
GL456379.1 72385 100.00% 257
GL456381.1 25871 100.00% 584
GL456382.1 23158 100.00% 56
GL456383.1 38659 100.00% 995
GL456385.1 35240 100.00% 173
GL456387.1 24685 100.00% 819
GL456389.1 28772 100.00% 558
GL456390.1 24668 100.00% 650
GL456392.1 23629 100.00% 798
GL456393.1 55711 100.00% 1974
GL456394.1 24323 100.00% 296
GL456396.1 21240 100.00% 549
JH584292.1 14945 100.00% 226
JH584293.1 207968 100.00% 3726
JH584294.1 191905 100.00% 3016
JH584295.1 1976 100.00% 174
JH584296.1 199368 100.00% 1192
JH584297.1 205776 100.00% 1086
JH584298.1 184189 100.00% 1050
JH584299.1 953012 100.00% 5134
JH584300.1 182347 100.00% 380
JH584301.1 259875 100.00% 369
JH584302.1 155838 100.00% 301
JH584303.1 158099 100.00% 307
JH584304.1 114452 100.00% 9399

Segment lengths

segments min max mean median
segments 96636596 10 3100760 28.26 10
global segment-length histogram

Files

Filename Size md5
LAMP5_ATAC_RPKM.bw 498.58 MB f7128fa9ebae92a4952be04dfb90ab11
genomic_resource.yaml 1.21 KB ba8562dcd2bd86a9d132e6b1c79a73b5
statistics/