Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/MGCcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for MGC cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: MGC
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_MGC_atac_rpkm float

zemke2023Conserved_mouse_mop_MGC_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for MGC cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_MGC_atac_rpkm [0, 1.6e+05]
n
2,730,871,774
mean
3.5
sd
30.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 80716448
chr1 195471971 100.00% 5687085
chr2 182113224 100.00% 6261358
chr3 160039680 100.00% 4231941
chr4 156508116 100.00% 4895912
chr5 151834684 100.00% 4892666
chr6 149736546 100.00% 4548418
chr7 145441459 100.00% 4725588
chr8 129401213 100.00% 4133672
chr9 124595110 100.00% 4311386
chr10 130694993 100.00% 4079015
chr11 122082543 100.00% 5035683
chr12 120129022 100.00% 3381606
chr13 120421639 100.00% 3788786
chr14 124902244 100.00% 3573000
chr15 104043685 100.00% 3333167
chr16 98207768 100.00% 2952351
chr17 94987271 100.00% 3316543
chr18 90702639 100.00% 2611636
chr19 61431566 100.00% 2126034
chrM 16299 100.00% 1607
chrX 171031299 100.00% 2267643
chrY 91744698 100.00% 477904
GL456210.1 169725 100.00% 2659
GL456211.1 241735 100.00% 4937
GL456212.1 153618 100.00% 3083
GL456213.1 39340 100.00% 1540
GL456216.1 66673 100.00% 3531
GL456219.1 175968 100.00% 1332
GL456221.1 206961 100.00% 3619
GL456233.1 336933 100.00% 4541
GL456239.1 40056 100.00% 1833
GL456350.1 227966 100.00% 1842
GL456354.1 195993 100.00% 1540
GL456359.1 22974 100.00% 828
GL456360.1 31704 100.00% 566
GL456366.1 47073 100.00% 1070
GL456367.1 42057 100.00% 292
GL456368.1 20208 100.00% 274
GL456370.1 26764 100.00% 1221
GL456372.1 28664 100.00% 535
GL456378.1 31602 100.00% 508
GL456379.1 72385 100.00% 410
GL456381.1 25871 100.00% 1462
GL456382.1 23158 100.00% 96
GL456383.1 38659 100.00% 1558
GL456385.1 35240 100.00% 320
GL456387.1 24685 100.00% 1841
GL456389.1 28772 100.00% 894
GL456390.1 24668 100.00% 964
GL456392.1 23629 100.00% 1111
GL456393.1 55711 100.00% 3617
GL456394.1 24323 100.00% 604
GL456396.1 21240 100.00% 820
JH584292.1 14945 100.00% 408
JH584293.1 207968 100.00% 2575
JH584294.1 191905 100.00% 1845
JH584295.1 1976 100.00% 180
JH584296.1 199368 100.00% 1615
JH584297.1 205776 100.00% 1720
JH584298.1 184189 100.00% 1503
JH584299.1 953012 100.00% 7738
JH584300.1 182347 100.00% 1607
JH584301.1 259875 100.00% 1447
JH584302.1 155838 100.00% 1162
JH584303.1 158099 100.00% 1382
JH584304.1 114452 100.00% 10817

Segment lengths

segments min max mean median
segments 80716448 10 3100390 33.83 10
global segment-length histogram

Files

Filename Size md5
MGC_ATAC_RPKM.bw 421.53 MB d9ce53d54cd587faae4a28905ad8ea78
genomic_resource.yaml 1.2 KB 2164939617542dd96a38278521f8727d
statistics/