Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/ODCcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for ODC cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: ODC
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_ODC_atac_rpkm float

zemke2023Conserved_mouse_mop_ODC_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for ODC cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_ODC_atac_rpkm [0, 1.6e+05]
n
2,730,871,774
mean
3.53
sd
29.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 106507209
chr1 195471971 100.00% 7664933
chr2 182113224 100.00% 8168465
chr3 160039680 100.00% 5824922
chr4 156508116 100.00% 6605578
chr5 151834684 100.00% 6752348
chr6 149736546 100.00% 6154703
chr7 145441459 100.00% 6126995
chr8 129401213 100.00% 5263187
chr9 124595110 100.00% 5785123
chr10 130694993 100.00% 5339573
chr11 122082543 100.00% 6206701
chr12 120129022 100.00% 4736799
chr13 120421639 100.00% 4778664
chr14 124902244 100.00% 4703383
chr15 104043685 100.00% 4270933
chr16 98207768 100.00% 3867698
chr17 94987271 100.00% 4149654
chr18 90702639 100.00% 3707159
chr19 61431566 100.00% 2721788
chrM 16299 100.00% 1616
chrX 171031299 100.00% 3077873
chrY 91744698 100.00% 505975
GL456210.1 169725 100.00% 2992
GL456211.1 241735 100.00% 5451
GL456212.1 153618 100.00% 3594
GL456213.1 39340 100.00% 1981
GL456216.1 66673 100.00% 2848
GL456219.1 175968 100.00% 1362
GL456221.1 206961 100.00% 4398
GL456233.1 336933 100.00% 9210
GL456239.1 40056 100.00% 1818
GL456350.1 227966 100.00% 3327
GL456354.1 195993 100.00% 1829
GL456359.1 22974 100.00% 928
GL456360.1 31704 100.00% 663
GL456366.1 47073 100.00% 1915
GL456367.1 42057 100.00% 483
GL456368.1 20208 100.00% 288
GL456370.1 26764 100.00% 737
GL456372.1 28664 100.00% 326
GL456378.1 31602 100.00% 581
GL456379.1 72385 100.00% 792
GL456381.1 25871 100.00% 875
GL456382.1 23158 100.00% 164
GL456383.1 38659 100.00% 1233
GL456385.1 35240 100.00% 440
GL456387.1 24685 100.00% 1166
GL456389.1 28772 100.00% 852
GL456390.1 24668 100.00% 777
GL456392.1 23629 100.00% 886
GL456393.1 55711 100.00% 2474
GL456394.1 24323 100.00% 418
GL456396.1 21240 100.00% 679
JH584292.1 14945 100.00% 350
JH584293.1 207968 100.00% 4247
JH584294.1 191905 100.00% 3722
JH584295.1 1976 100.00% 182
JH584296.1 199368 100.00% 1851
JH584297.1 205776 100.00% 1868
JH584298.1 184189 100.00% 1990
JH584299.1 953012 100.00% 7873
JH584300.1 182347 100.00% 1648
JH584301.1 259875 100.00% 1591
JH584302.1 155838 100.00% 935
JH584303.1 158099 100.00% 1324
JH584304.1 114452 100.00% 10071

Segment lengths

segments min max mean median
segments 106507209 10 3100090 25.64 10
global segment-length histogram

Files

Filename Size md5
ODC_ATAC_RPKM.bw 559.73 MB 410fe89c000832fbafacb9c9a28e6636
genomic_resource.yaml 1.2 KB 502173bd7cab938139b53b80c162bca6
statistics/