Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/OPCcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for OPC cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: OPC
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_OPC_atac_rpkm float

zemke2023Conserved_mouse_mop_OPC_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for OPC cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_OPC_atac_rpkm [0, 1.21e+05]
n
2,730,871,774
mean
3.54
sd
21.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 47221783
chr1 195471971 100.00% 3368373
chr2 182113224 100.00% 3700638
chr3 160039680 100.00% 2437721
chr4 156508116 100.00% 3007706
chr5 151834684 100.00% 3015001
chr6 149736546 100.00% 2647491
chr7 145441459 100.00% 2761186
chr8 129401213 100.00% 2489608
chr9 124595110 100.00% 2623050
chr10 130694993 100.00% 2322518
chr11 122082543 100.00% 2906817
chr12 120129022 100.00% 2128176
chr13 120421639 100.00% 2040429
chr14 124902244 100.00% 2064100
chr15 104043685 100.00% 1956384
chr16 98207768 100.00% 1733560
chr17 94987271 100.00% 1914069
chr18 90702639 100.00% 1610935
chr19 61431566 100.00% 1257016
chrM 16299 100.00% 1577
chrX 171031299 100.00% 1075005
chrY 91744698 100.00% 126746
GL456210.1 169725 100.00% 836
GL456211.1 241735 100.00% 1381
GL456212.1 153618 100.00% 1038
GL456213.1 39340 100.00% 1069
GL456216.1 66673 100.00% 1372
GL456219.1 175968 100.00% 197
GL456221.1 206961 100.00% 1287
GL456233.1 336933 100.00% 2561
GL456239.1 40056 100.00% 704
GL456350.1 227966 100.00% 1350
GL456354.1 195993 100.00% 314
GL456359.1 22974 100.00% 332
GL456360.1 31704 100.00% 154
GL456366.1 47073 100.00% 493
GL456367.1 42057 100.00% 115
GL456368.1 20208 100.00% 61
GL456370.1 26764 100.00% 319
GL456372.1 28664 100.00% 97
GL456378.1 31602 100.00% 131
GL456379.1 72385 100.00% 195
GL456381.1 25871 100.00% 243
GL456382.1 23158 100.00% 17
GL456383.1 38659 100.00% 363
GL456385.1 35240 100.00% 52
GL456387.1 24685 100.00% 453
GL456389.1 28772 100.00% 298
GL456390.1 24668 100.00% 322
GL456392.1 23629 100.00% 381
GL456393.1 55711 100.00% 948
GL456394.1 24323 100.00% 154
GL456396.1 21240 100.00% 288
JH584292.1 14945 100.00% 99
JH584293.1 207968 100.00% 2140
JH584294.1 191905 100.00% 1868
JH584295.1 1976 100.00% 158
JH584296.1 199368 100.00% 302
JH584297.1 205776 100.00% 487
JH584298.1 184189 100.00% 410
JH584299.1 953012 100.00% 1615
JH584300.1 182347 100.00% 412
JH584301.1 259875 100.00% 424
JH584302.1 155838 100.00% 271
JH584303.1 158099 100.00% 297
JH584304.1 114452 100.00% 7669

Segment lengths

segments min max mean median
segments 47221783 10 3100420 57.83 10
global segment-length histogram

Files

Filename Size md5
OPC_ATAC_RPKM.bw 238.0 MB 9c6ed974c92b04a668994905cc8ba223
genomic_resource.yaml 1.2 KB 0c9fe5a00a0efd205910fb02ad064dbc
statistics/