Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/PVALBcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for PVALB cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: PVALB
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_PVALB_atac_rpkm float

zemke2023Conserved_mouse_mop_PVALB_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for PVALB cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_PVALB_atac_rpkm [0, 1.02e+05]
n
2,730,871,774
mean
3.59
sd
17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 152783719
chr1 195471971 100.00% 11546446
chr2 182113224 100.00% 11311010
chr3 160039680 100.00% 8889929
chr4 156508116 100.00% 9163951
chr5 151834684 100.00% 9326857
chr6 149736546 100.00% 8889371
chr7 145441459 100.00% 8310125
chr8 129401213 100.00% 7809056
chr9 124595110 100.00% 7814554
chr10 130694993 100.00% 7771762
chr11 122082543 100.00% 8023751
chr12 120129022 100.00% 6925937
chr13 120421639 100.00% 7007638
chr14 124902244 100.00% 7173436
chr15 104043685 100.00% 6191981
chr16 98207768 100.00% 5716530
chr17 94987271 100.00% 5599674
chr18 90702639 100.00% 5306414
chr19 61431566 100.00% 3616969
chrM 16299 100.00% 1618
chrX 171031299 100.00% 5514988
chrY 91744698 100.00% 717813
GL456210.1 169725 100.00% 7593
GL456211.1 241735 100.00% 12055
GL456212.1 153618 100.00% 7590
GL456213.1 39340 100.00% 2870
GL456216.1 66673 100.00% 3167
GL456219.1 175968 100.00% 2718
GL456221.1 206961 100.00% 9847
GL456233.1 336933 100.00% 8241
GL456239.1 40056 100.00% 2771
GL456350.1 227966 100.00% 5829
GL456354.1 195993 100.00% 4198
GL456359.1 22974 100.00% 926
GL456360.1 31704 100.00% 1162
GL456366.1 47073 100.00% 1926
GL456367.1 42057 100.00% 583
GL456368.1 20208 100.00% 484
GL456370.1 26764 100.00% 1157
GL456372.1 28664 100.00% 1032
GL456378.1 31602 100.00% 1031
GL456379.1 72385 100.00% 1114
GL456381.1 25871 100.00% 1257
GL456382.1 23158 100.00% 200
GL456383.1 38659 100.00% 1552
GL456385.1 35240 100.00% 896
GL456387.1 24685 100.00% 1656
GL456389.1 28772 100.00% 1026
GL456390.1 24668 100.00% 923
GL456392.1 23629 100.00% 1050
GL456393.1 55711 100.00% 3521
GL456394.1 24323 100.00% 671
GL456396.1 21240 100.00% 851
JH584292.1 14945 100.00% 587
JH584293.1 207968 100.00% 6498
JH584294.1 191905 100.00% 6715
JH584295.1 1976 100.00% 186
JH584296.1 199368 100.00% 4162
JH584297.1 205776 100.00% 3927
JH584298.1 184189 100.00% 3826
JH584299.1 953012 100.00% 19631
JH584300.1 182347 100.00% 2224
JH584301.1 259875 100.00% 2278
JH584302.1 155838 100.00% 1646
JH584303.1 158099 100.00% 1806
JH584304.1 114452 100.00% 10526

Segment lengths

segments min max mean median
segments 152783719 10 3100000 17.87 10
global segment-length histogram

Files

Filename Size md5
PVALB_ATAC_RPKM.bw 825.22 MB fb915e26a861f4904151a3c12e326a5c
genomic_resource.yaml 1.21 KB c29ad2831e81c3984c2595ae9c23b722
statistics/