Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/SNCGcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for SNCG cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: SNCG
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_SNCG_atac_rpkm float

zemke2023Conserved_mouse_mop_SNCG_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for SNCG cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_SNCG_atac_rpkm [0, 1.02e+05]
n
2,730,871,774
mean
3.57
sd
17.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 69555884
chr1 195471971 100.00% 5089099
chr2 182113224 100.00% 5285360
chr3 160039680 100.00% 3776494
chr4 156508116 100.00% 4286050
chr5 151834684 100.00% 4436204
chr6 149736546 100.00% 3944163
chr7 145441459 100.00% 3888480
chr8 129401213 100.00% 3717373
chr9 124595110 100.00% 3760024
chr10 130694993 100.00% 3541249
chr11 122082543 100.00% 4064554
chr12 120129022 100.00% 3257913
chr13 120421639 100.00% 3115513
chr14 124902244 100.00% 3066129
chr15 104043685 100.00% 2942524
chr16 98207768 100.00% 2636609
chr17 94987271 100.00% 2707173
chr18 90702639 100.00% 2462240
chr19 61431566 100.00% 1728941
chrM 16299 100.00% 1584
chrX 171031299 100.00% 1739295
chrY 91744698 100.00% 68855
GL456210.1 169725 100.00% 1325
GL456211.1 241735 100.00% 2468
GL456212.1 153618 100.00% 1483
GL456213.1 39340 100.00% 1686
GL456216.1 66673 100.00% 1423
GL456219.1 175968 100.00% 368
GL456221.1 206961 100.00% 2042
GL456233.1 336933 100.00% 2708
GL456239.1 40056 100.00% 935
GL456350.1 227966 100.00% 1604
GL456354.1 195993 100.00% 584
GL456359.1 22974 100.00% 300
GL456360.1 31704 100.00% 236
GL456366.1 47073 100.00% 446
GL456367.1 42057 100.00% 119
GL456368.1 20208 100.00% 58
GL456370.1 26764 100.00% 477
GL456372.1 28664 100.00% 168
GL456378.1 31602 100.00% 132
GL456379.1 72385 100.00% 156
GL456381.1 25871 100.00% 345
GL456382.1 23158 100.00% 43
GL456383.1 38659 100.00% 550
GL456385.1 35240 100.00% 105
GL456387.1 24685 100.00% 520
GL456389.1 28772 100.00% 213
GL456390.1 24668 100.00% 447
GL456392.1 23629 100.00% 406
GL456393.1 55711 100.00% 1157
GL456394.1 24323 100.00% 205
GL456396.1 21240 100.00% 381
JH584292.1 14945 100.00% 108
JH584293.1 207968 100.00% 2573
JH584294.1 191905 100.00% 1960
JH584295.1 1976 100.00% 178
JH584296.1 199368 100.00% 606
JH584297.1 205776 100.00% 514
JH584298.1 184189 100.00% 606
JH584299.1 953012 100.00% 2487
JH584300.1 182347 100.00% 126
JH584301.1 259875 100.00% 151
JH584302.1 155838 100.00% 65
JH584303.1 158099 100.00% 210
JH584304.1 114452 100.00% 7384

Segment lengths

segments min max mean median
segments 69555884 10 3102640 39.26 10
global segment-length histogram

Files

Filename Size md5
SNCG_ATAC_RPKM.bw 354.75 MB 984ae38a0e10225eaa3d2fecc43cb217
genomic_resource.yaml 1.2 KB e9f82c8a21e7ab5537d38c0a9b22eec5
statistics/