Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/SSTcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for SST cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: SST
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_SST_atac_rpkm float

zemke2023Conserved_mouse_mop_SST_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for SST cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_SST_atac_rpkm [0, 1.01e+05]
n
2,730,871,774
mean
3.6
sd
17.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 127798741
chr1 195471971 100.00% 9562482
chr2 182113224 100.00% 9518870
chr3 160039680 100.00% 7339996
chr4 156508116 100.00% 7766363
chr5 151834684 100.00% 7871920
chr6 149736546 100.00% 7447924
chr7 145441459 100.00% 6956500
chr8 129401213 100.00% 6599172
chr9 124595110 100.00% 6680238
chr10 130694993 100.00% 6619373
chr11 122082543 100.00% 6958432
chr12 120129022 100.00% 5843526
chr13 120421639 100.00% 5822209
chr14 124902244 100.00% 5959529
chr15 104043685 100.00% 5204958
chr16 98207768 100.00% 4856972
chr17 94987271 100.00% 4761468
chr18 90702639 100.00% 4443473
chr19 61431566 100.00% 3039605
chrM 16299 100.00% 1608
chrX 171031299 100.00% 4115546
chrY 91744698 100.00% 319088
GL456210.1 169725 100.00% 5114
GL456211.1 241735 100.00% 8978
GL456212.1 153618 100.00% 5963
GL456213.1 39340 100.00% 2744
GL456216.1 66673 100.00% 2641
GL456219.1 175968 100.00% 1577
GL456221.1 206961 100.00% 7250
GL456233.1 336933 100.00% 6012
GL456239.1 40056 100.00% 2205
GL456350.1 227966 100.00% 4441
GL456354.1 195993 100.00% 2503
GL456359.1 22974 100.00% 616
GL456360.1 31704 100.00% 729
GL456366.1 47073 100.00% 1445
GL456367.1 42057 100.00% 253
GL456368.1 20208 100.00% 270
GL456370.1 26764 100.00% 948
GL456372.1 28664 100.00% 718
GL456378.1 31602 100.00% 827
GL456379.1 72385 100.00% 470
GL456381.1 25871 100.00% 976
GL456382.1 23158 100.00% 112
GL456383.1 38659 100.00% 1243
GL456385.1 35240 100.00% 486
GL456387.1 24685 100.00% 1409
GL456389.1 28772 100.00% 839
GL456390.1 24668 100.00% 790
GL456392.1 23629 100.00% 904
GL456393.1 55711 100.00% 2798
GL456394.1 24323 100.00% 532
GL456396.1 21240 100.00% 651
JH584292.1 14945 100.00% 478
JH584293.1 207968 100.00% 5260
JH584294.1 191905 100.00% 5136
JH584295.1 1976 100.00% 192
JH584296.1 199368 100.00% 2361
JH584297.1 205776 100.00% 2271
JH584298.1 184189 100.00% 2420
JH584299.1 953012 100.00% 11672
JH584300.1 182347 100.00% 803
JH584301.1 259875 100.00% 902
JH584302.1 155838 100.00% 769
JH584303.1 158099 100.00% 768
JH584304.1 114452 100.00% 10013

Segment lengths

segments min max mean median
segments 127798741 10 3100160 21.37 10
global segment-length histogram

Files

Filename Size md5
SST_ATAC_RPKM.bw 671.88 MB 2dbb15d9f598f06b5785a35d86605fe1
genomic_resource.yaml 1.2 KB 473a2eaae1c97e3a09d8fd9d0dd743c4
statistics/