Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/VIPcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for VIP cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: VIP
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_VIP_atac_rpkm float

zemke2023Conserved_mouse_mop_VIP_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for VIP cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_VIP_atac_rpkm [0, 1.11e+05]
n
2,730,871,774
mean
3.57
sd
18.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 85357312
chr1 195471971 100.00% 6295212
chr2 182113224 100.00% 6441856
chr3 160039680 100.00% 4668298
chr4 156508116 100.00% 5236335
chr5 151834684 100.00% 5419066
chr6 149736546 100.00% 4911264
chr7 145441459 100.00% 4770208
chr8 129401213 100.00% 4449140
chr9 124595110 100.00% 4623541
chr10 130694993 100.00% 4324891
chr11 122082543 100.00% 4868759
chr12 120129022 100.00% 3916161
chr13 120421639 100.00% 3885465
chr14 124902244 100.00% 3839859
chr15 104043685 100.00% 3607791
chr16 98207768 100.00% 3243485
chr17 94987271 100.00% 3257745
chr18 90702639 100.00% 2988987
chr19 61431566 100.00% 2091178
chrM 16299 100.00% 1593
chrX 171031299 100.00% 2345365
chrY 91744698 100.00% 114695
GL456210.1 169725 100.00% 2193
GL456211.1 241735 100.00% 3933
GL456212.1 153618 100.00% 2911
GL456213.1 39340 100.00% 1943
GL456216.1 66673 100.00% 2006
GL456219.1 175968 100.00% 499
GL456221.1 206961 100.00% 3062
GL456233.1 336933 100.00% 3495
GL456239.1 40056 100.00% 1223
GL456350.1 227966 100.00% 2012
GL456354.1 195993 100.00% 1064
GL456359.1 22974 100.00% 509
GL456360.1 31704 100.00% 466
GL456366.1 47073 100.00% 825
GL456367.1 42057 100.00% 105
GL456368.1 20208 100.00% 31
GL456370.1 26764 100.00% 605
GL456372.1 28664 100.00% 253
GL456378.1 31602 100.00% 200
GL456379.1 72385 100.00% 293
GL456381.1 25871 100.00% 557
GL456382.1 23158 100.00% 57
GL456383.1 38659 100.00% 653
GL456385.1 35240 100.00% 215
GL456387.1 24685 100.00% 747
GL456389.1 28772 100.00% 441
GL456390.1 24668 100.00% 459
GL456392.1 23629 100.00% 512
GL456393.1 55711 100.00% 1811
GL456394.1 24323 100.00% 273
GL456396.1 21240 100.00% 445
JH584292.1 14945 100.00% 189
JH584293.1 207968 100.00% 3401
JH584294.1 191905 100.00% 2737
JH584295.1 1976 100.00% 176
JH584296.1 199368 100.00% 781
JH584297.1 205776 100.00% 930
JH584298.1 184189 100.00% 1055
JH584299.1 953012 100.00% 4096
JH584300.1 182347 100.00% 256
JH584301.1 259875 100.00% 285
JH584302.1 155838 100.00% 183
JH584303.1 158099 100.00% 309
JH584304.1 114452 100.00% 8222

Segment lengths

segments min max mean median
segments 85357312 10 3100550 31.99 10
global segment-length histogram

Files

Filename Size md5
VIP_ATAC_RPKM.bw 441.0 MB 9848b84213eeb61fe2549d51ff44c506
genomic_resource.yaml 1.2 KB b24d717bbab10a80c04f5fe675530bd3
statistics/