Resource

Id summary/zemke2023Conserved/pseudobulk_atac/mouse_mop/VLMCcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk atac track in mouse_mop for VLMC cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: VLMC
  • data_types: atac_signal
  • dataset: zemke2023Conserved
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_VLMC_atac_rpkm float

zemke2023Conserved_mouse_mop_VLMC_atac_rpkm
Pseudo-bulk RPKM atac in mouse_mop for VLMC cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_VLMC_atac_rpkm [0, 1.32e+05]
n
2,730,871,774
mean
3.55
sd
24.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 67198310
chr1 195471971 100.00% 4804207
chr2 182113224 100.00% 5135899
chr3 160039680 100.00% 3628992
chr4 156508116 100.00% 4236672
chr5 151834684 100.00% 4237217
chr6 149736546 100.00% 3806705
chr7 145441459 100.00% 3831220
chr8 129401213 100.00% 3461574
chr9 124595110 100.00% 3734673
chr10 130694993 100.00% 3372793
chr11 122082543 100.00% 4053636
chr12 120129022 100.00% 2925363
chr13 120421639 100.00% 3017649
chr14 124902244 100.00% 2943753
chr15 104043685 100.00% 2772103
chr16 98207768 100.00% 2498069
chr17 94987271 100.00% 2673021
chr18 90702639 100.00% 2297680
chr19 61431566 100.00% 1743920
chrM 16299 100.00% 1617
chrX 171031299 100.00% 1701782
chrY 91744698 100.00% 255835
GL456210.1 169725 100.00% 2312
GL456211.1 241735 100.00% 3867
GL456212.1 153618 100.00% 2462
GL456213.1 39340 100.00% 1691
GL456216.1 66673 100.00% 1665
GL456219.1 175968 100.00% 628
GL456221.1 206961 100.00% 2820
GL456233.1 336933 100.00% 2807
GL456239.1 40056 100.00% 1206
GL456350.1 227966 100.00% 3092
GL456354.1 195993 100.00% 1069
GL456359.1 22974 100.00% 586
GL456360.1 31704 100.00% 868
GL456366.1 47073 100.00% 1060
GL456367.1 42057 100.00% 185
GL456368.1 20208 100.00% 179
GL456370.1 26764 100.00% 500
GL456372.1 28664 100.00% 360
GL456378.1 31602 100.00% 378
GL456379.1 72385 100.00% 315
GL456381.1 25871 100.00% 601
GL456382.1 23158 100.00% 73
GL456383.1 38659 100.00% 853
GL456385.1 35240 100.00% 223
GL456387.1 24685 100.00% 959
GL456389.1 28772 100.00% 560
GL456390.1 24668 100.00% 570
GL456392.1 23629 100.00% 622
GL456393.1 55711 100.00% 1910
GL456394.1 24323 100.00% 334
GL456396.1 21240 100.00% 518
JH584292.1 14945 100.00% 218
JH584293.1 207968 100.00% 4113
JH584294.1 191905 100.00% 3700
JH584295.1 1976 100.00% 181
JH584296.1 199368 100.00% 1069
JH584297.1 205776 100.00% 1076
JH584298.1 184189 100.00% 981
JH584299.1 953012 100.00% 4775
JH584300.1 182347 100.00% 848
JH584301.1 259875 100.00% 769
JH584302.1 155838 100.00% 679
JH584303.1 158099 100.00% 624
JH584304.1 114452 100.00% 9624

Segment lengths

segments min max mean median
segments 67198310 10 3100120 40.64 10
global segment-length histogram

Files

Filename Size md5
VLMC_ATAC_RPKM.bw 341.48 MB 705925b3d4bf4be8ca9dd0ff617fdd5f
genomic_resource.yaml 1.2 KB 9bbdfe45f0170292de8d873d2e311b95
statistics/