Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/Astro/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for Astro cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Astro
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_Astro_cgn_mc float

zemke2023Conserved_Human_Astro_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Human_Astro_cgn_mc [0, 1]
n
936,339,869
mean
0.846
sd
0.247

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 93633986928.66% 18381239
chr1 75357600 30.27% 1480663
chr2 75003050 30.97% 1473537
chr3 58522900 29.51% 1150616
chr4 52783400 27.75% 1038611
chr5 52437950 28.89% 1031322
chr6 50210200 29.40% 985948
chr7 52255000 32.79% 1024718
chr8 44138000 30.41% 866965
chr9 39459750 28.51% 774948
chr10 46048000 34.42% 905226
chr11 43604000 32.28% 858418
chr12 43676900 32.77% 858293
chr13 28504250 24.92% 560527
chr14 28136350 26.28% 553703
chr15 26961500 26.44% 528722
chr16 32467600 35.94% 638134
chr17 33298950 40.00% 652899
chr18 24726550 30.76% 484350
chr19 28204700 48.12% 556610
chr20 24218850 37.58% 476913
chr21 12457450 26.67% 245155
chr22 16959950 33.37% 333671
chrM 12019 72.54% 241
chrX 42318350 27.12% 811722
chrY 4576600 8.00% 89327
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18381239 19 550 50.94 50
global segment-length histogram

Files

Filename Size md5
Astro.CGN-both.bedgraph.gz 141.64 MB 95c90098489937799165253ef18a9da5
Astro.CGN-both.bedgraph.gz.tbi 670.0 KB 23899d14efe2cacf847c581b741873ed
genomic_resource.yaml 1.08 KB bb18b097546776d3d15b64c1a1281b10
statistics/