Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/Astro/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for Astro cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Astro
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_Astro_chn_mc float

zemke2023Conserved_Human_Astro_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_Astro_chn_mc [0, 1]
n
2,813,182,619
mean
0.02
sd
0.0201

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 281318261986.11% 55523838
chr1 221523850 88.98% 4388488
chr2 236027550 97.45% 4680729
chr3 194840100 98.26% 3868829
chr4 186396850 97.99% 3688043
chr5 174840950 96.31% 3463542
chr6 163398850 95.66% 3234662
chr7 154141450 96.73% 3040316
chr8 139733400 96.28% 2763527
chr9 114778550 82.94% 2260526
chr10 130743050 97.72% 2590614
chr11 131130950 97.07% 2593294
chr12 130524150 97.94% 2583216
chr13 95302200 83.33% 1890159
chr14 85798550 80.15% 1696521
chr15 76148350 74.66% 1499538
chr16 75539150 83.62% 1487095
chr17 74890300 89.95% 1469836
chr18 76698050 95.43% 1497914
chr19 54240450 92.53% 1070174
chr20 62108450 96.38% 1227437
chr21 35098900 75.14% 685049
chr22 35200150 69.27% 687467
chrM 16569 100.00% 332
chrX 146313500 93.77% 2832698
chrY 17748300 31.01% 323832
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55523838 19 1300 50.67 50
global segment-length histogram

Files

Filename Size md5
Astro.CHN-both.bedgraph.gz 458.57 MB 7b1e74e7ba98350862728b6ef198bb7f
Astro.CHN-both.bedgraph.gz.tbi 602.36 KB c20df1147b194e24955d9ef37c59a3d5
genomic_resource.yaml 1.08 KB bc3c14e5f6c56a96164fcddbee06a868
statistics/