Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/CLA/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for CLA cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: CLA
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_CLA_cgn_mc float

zemke2023Conserved_Human_CLA_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Human_CLA_cgn_mc [0, 1]
n
894,774,419
mean
0.857
sd
0.276

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89477441927.39% 14028148
chr1 72501550 29.12% 1129641
chr2 72392300 29.89% 1140420
chr3 56511500 28.50% 902062
chr4 50620900 26.61% 808925
chr5 50514200 27.83% 808675
chr6 48293900 28.27% 763397
chr7 49808300 31.26% 781260
chr8 42334350 29.17% 668404
chr9 37653050 27.21% 585564
chr10 44397000 33.18% 693148
chr11 41933800 31.04% 662780
chr12 41964200 31.49% 659521
chr13 27500250 24.05% 435195
chr14 27073350 25.29% 425658
chr15 25680000 25.18% 400879
chr16 31001750 34.32% 474941
chr17 31585550 37.94% 478913
chr18 23248100 28.93% 365508
chr19 27165100 46.34% 412390
chr20 23336650 36.21% 360699
chr21 11773250 25.20% 183275
chr22 16139500 31.76% 242377
chrM 12019 72.54% 236
chrX 37521100 24.05% 579441
chrY 3812750 6.66% 64839
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14028148 19 1650 63.78 50
global segment-length histogram

Files

Filename Size md5
CLA.CGN-both.bedgraph.gz 83.93 MB eea5863fbc7570a796cb75db2ee2c2cf
CLA.CGN-both.bedgraph.gz.tbi 665.46 KB 79564b543b38b497a1b6ea7ded935074
genomic_resource.yaml 1.07 KB d27f36be54c678d818d7404de3f4d5c7
statistics/