Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/CLA/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for CLA cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: CLA
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_CLA_chn_mc float

zemke2023Conserved_Human_CLA_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_CLA_chn_mc [0, 1]
n
2,749,199,519
mean
0.0645
sd
0.0698

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 274919951984.15% 50367534
chr1 217354200 87.31% 4011426
chr2 232438900 95.97% 4305294
chr3 192392500 97.02% 3554949
chr4 183203250 96.31% 3370524
chr5 172020800 94.76% 3179294
chr6 160585750 94.02% 2971200
chr7 150482200 94.44% 2768088
chr8 136989000 94.38% 2539754
chr9 111508750 80.57% 2060017
chr10 128568150 96.09% 2386674
chr11 128614250 95.21% 2375410
chr12 128253300 96.23% 2345807
chr13 93881050 82.09% 1729260
chr14 84001200 78.47% 1544619
chr15 73804850 72.36% 1353431
chr16 73270100 81.11% 1350818
chr17 72151700 86.66% 1318676
chr18 74058400 92.14% 1375248
chr19 52804700 90.08% 948822
chr20 60809800 94.36% 1133102
chr21 33655950 72.05% 616305
chr22 33641500 66.20% 615955
chrM 16569 100.00% 331
chrX 139140500 89.17% 2273351
chrY 15552150 27.18% 239179
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50367534 19 1550 54.58 50
global segment-length histogram

Files

Filename Size md5
CLA.CHN-both.bedgraph.gz 364.93 MB e578468f5fb6e25c3afb2198bf6d6146
CLA.CHN-both.bedgraph.gz.tbi 600.8 KB b81b7ee9cec2f77d3dfd39d730cc3847
genomic_resource.yaml 1.07 KB 7ea5256718f08076332e9c3683bab83f
statistics/