Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/L23/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for L23 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L23
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_L23_chn_mc float

zemke2023Conserved_Human_L23_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_L23_chn_mc [0, 1]
n
2,819,073,069
mean
0.0475
sd
0.0423

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 281907306986.29% 55946352
chr1 221877200 89.12% 4411781
chr2 236231100 97.54% 4702741
chr3 195003300 98.34% 3885751
chr4 186626050 98.11% 3710990
chr5 175098450 96.45% 3483677
chr6 163631650 95.80% 3253007
chr7 154430450 96.92% 3064803
chr8 139988000 96.45% 2778466
chr9 115065400 83.14% 2280801
chr10 130881900 97.82% 2604620
chr11 131356850 97.24% 2608662
chr12 130679850 98.05% 2598675
chr13 95452700 83.46% 1899053
chr14 86020450 80.36% 1706086
chr15 76457400 74.96% 1512442
chr16 75815400 83.92% 1498859
chr17 75258000 90.39% 1481694
chr18 77118700 95.95% 1515594
chr19 54449200 92.89% 1077694
chr20 62261200 96.61% 1234666
chr21 35333500 75.64% 692988
chr22 35409850 69.68% 694390
chrM 16569 100.00% 332
chrX 146608400 93.96% 2903264
chrY 18001500 31.46% 345316
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55946352 19 1250 50.39 50
global segment-length histogram

Files

Filename Size md5
L23.CHN-both.bedgraph.gz 469.89 MB 4a8e4f6fa1b99704c2ca0fec8a3f606a
L23.CHN-both.bedgraph.gz.tbi 600.78 KB a51fd1abecff2c0e7eb9cd38367eb203
genomic_resource.yaml 1.07 KB 6f350653fdec77943ebe49e91d98d1f5
statistics/