Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/L4/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for L4 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L4
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_L4_chn_mc float

zemke2023Conserved_Human_L4_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_L4_chn_mc [0, 1]
n
2,800,007,569
mean
0.0617
sd
0.0539

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 280000756985.70% 55523647
chr1 220692100 88.65% 4383962
chr2 235414750 97.20% 4679544
chr3 194442600 98.06% 3869397
chr4 185812300 97.69% 3692136
chr5 174255600 95.99% 3464024
chr6 162811400 95.32% 3234463
chr7 153283300 96.20% 3040786
chr8 139141250 95.87% 2761745
chr9 114085000 82.43% 2259965
chr10 130361250 97.43% 2590472
chr11 130615250 96.69% 2592289
chr12 130088450 97.61% 2584334
chr13 94998550 83.07% 1889125
chr14 85363050 79.75% 1692870
chr15 75576950 74.10% 1495827
chr16 74994100 83.01% 1483138
chr17 74182250 89.10% 1463694
chr18 75965000 94.52% 1500304
chr19 53871150 91.90% 1066663
chr20 61788550 95.88% 1226220
chr21 34690900 74.27% 682024
chr22 34787000 68.45% 682945
chrM 16569 100.00% 332
chrX 145505450 93.25% 2858427
chrY 17264800 30.17% 328961
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55523647 19 1100 50.43 50
global segment-length histogram

Files

Filename Size md5
L4.CHN-both.bedgraph.gz 458.5 MB d89b370b8f97f039ff88ca2a3b4c9d7d
L4.CHN-both.bedgraph.gz.tbi 603.39 KB adb9eb5a719e94880fc426c3db845c9f
genomic_resource.yaml 1.06 KB c62b4cdb1fcdf2e6c65c1acd61e5d960
statistics/