Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/L6-CT/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for L6-CT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6-CT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_L6-CT_chn_mc float

zemke2023Conserved_Human_L6-CT_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_L6-CT_chn_mc [0, 1]
n
2,775,626,969
mean
0.0506
sd
0.0526

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 277562696984.96% 52991445
chr1 219098600 88.01% 4204678
chr2 234053600 96.64% 4496457
chr3 193550900 97.61% 3728942
chr4 184627000 97.06% 3556104
chr5 173155200 95.38% 3330331
chr6 161721000 94.68% 3111339
chr7 151837350 95.29% 2909401
chr8 138069850 95.13% 2657617
chr9 112766200 81.48% 2157817
chr10 129533550 96.81% 2492954
chr11 129647800 95.97% 2490449
chr12 129240650 96.97% 2479314
chr13 94492400 82.62% 1819780
chr14 84659500 79.09% 1620744
chr15 74616200 73.16% 1427072
chr16 74062200 81.98% 1415518
chr17 73055450 87.75% 1389987
chr18 74828000 93.10% 1441247
chr19 53298600 90.93% 1006093
chr20 61277100 95.09% 1181477
chr21 34094000 72.99% 647212
chr22 34147300 67.19% 647464
chrM 16569 100.00% 332
chrX 143363150 91.88% 2510639
chrY 16414800 28.68% 268477
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52991445 19 1150 52.38 50
global segment-length histogram

Files

Filename Size md5
L6-CT.CHN-both.bedgraph.gz 404.66 MB 153f5861301e2ef60fec52978dbac4f9
L6-CT.CHN-both.bedgraph.gz.tbi 603.12 KB a84b8520d9c62285eb6e80d21517be45
genomic_resource.yaml 1.08 KB 533cb9536f65ca17b275af5f6baf88ea
statistics/