Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/L6b/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for L6b cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6b
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_L6b_chn_mc float

zemke2023Conserved_Human_L6b_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_L6b_chn_mc [0, 1]
n
2,765,768,919
mean
0.0701
sd
0.0712

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 276576891984.65% 52421561
chr1 218429100 87.74% 4159751
chr2 233454900 96.39% 4464103
chr3 193130100 97.40% 3691727
chr4 184062700 96.77% 3516888
chr5 172756200 95.16% 3305166
chr6 161303950 94.44% 3082861
chr7 151328000 94.97% 2883222
chr8 137664450 94.85% 2630874
chr9 112286450 81.13% 2135102
chr10 129179500 96.55% 2469550
chr11 129225750 95.66% 2460254
chr12 128846350 96.68% 2442290
chr13 94278900 82.44% 1805503
chr14 84405800 78.85% 1604447
chr15 74314850 72.86% 1410368
chr16 73762300 81.65% 1398432
chr17 72693100 87.31% 1370882
chr18 74455950 92.64% 1428296
chr19 53119800 90.62% 989971
chr20 61102850 94.82% 1171170
chr21 33911500 72.60% 637393
chr22 33935900 66.78% 637708
chrM 16569 100.00% 332
chrX 142017250 91.01% 2468628
chrY 16086700 28.11% 256643
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52421561 19 1300 52.76 50
global segment-length histogram

Files

Filename Size md5
L6b.CHN-both.bedgraph.gz 393.76 MB 8dbf6cff20034a0dcc13801e658124cd
L6b.CHN-both.bedgraph.gz.tbi 602.33 KB 74893088148f14e15c039fd61ac2e2ab
genomic_resource.yaml 1.07 KB 3a3c8a9ce5be6ed338f7281cffbd16e6
statistics/