Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/MG/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for MG cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: MG
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_MG_chn_mc float

zemke2023Conserved_Human_MG_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_MG_chn_mc [0, 1]
n
2,800,576,319
mean
0.0103
sd
0.0136

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 280057631985.72% 53123122
chr1 220737200 88.66% 4233690
chr2 235457550 97.22% 4500361
chr3 194476500 98.07% 3724796
chr4 185841900 97.70% 3525188
chr5 174305050 96.02% 3329264
chr6 162841150 95.34% 3105556
chr7 153383650 96.26% 2918134
chr8 139127100 95.86% 2656444
chr9 114135050 82.47% 2170796
chr10 130391950 97.45% 2504907
chr11 130622350 96.70% 2500026
chr12 130107350 97.62% 2490439
chr13 95013650 83.08% 1810531
chr14 85370700 79.75% 1634649
chr15 75619150 74.14% 1444926
chr16 74998850 83.02% 1439465
chr17 74180500 89.10% 1418709
chr18 75929000 94.47% 1438469
chr19 53872600 91.91% 1041800
chr20 61806600 95.91% 1191645
chr21 34682500 74.25% 655393
chr22 34782600 68.44% 665231
chrM 16569 100.00% 332
chrX 145603250 93.31% 2449867
chrY 17273550 30.18% 272504
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53123122 19 1250 52.72 50
global segment-length histogram

Files

Filename Size md5
MG.CHN-both.bedgraph.gz 417.31 MB 89f12d85722cf1cf999bb3b386d40d69
MG.CHN-both.bedgraph.gz.tbi 598.09 KB 2329ab63aee4d3d75b880487079d0445
genomic_resource.yaml 1.06 KB 11753237137146f910fb4d6bbd51dc83
statistics/