Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/NP/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for NP cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: NP
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_NP_cgn_mc float

zemke2023Conserved_Human_NP_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Human_NP_cgn_mc [0, 1]
n
895,739,569
mean
0.885
sd
0.243

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89573956927.42% 13931028
chr1 72502450 29.12% 1123567
chr2 72402850 29.89% 1133780
chr3 56653950 28.57% 897669
chr4 50762050 26.69% 808201
chr5 50476400 27.80% 798336
chr6 48313750 28.29% 756414
chr7 49838500 31.28% 772668
chr8 42413650 29.22% 664343
chr9 37651950 27.21% 581934
chr10 44417750 33.20% 686069
chr11 41975750 31.07% 658672
chr12 42031100 31.54% 653187
chr13 27537000 24.08% 432392
chr14 27081050 25.30% 421045
chr15 25720450 25.22% 397001
chr16 31087300 34.41% 474323
chr17 31676900 38.05% 478661
chr18 23255350 28.93% 362179
chr19 27173150 46.36% 408631
chr20 23354650 36.24% 358385
chr21 11781450 25.22% 182432
chr22 16155600 31.79% 238543
chrM 12019 72.54% 239
chrX 37673150 24.14% 578026
chrY 3791350 6.63% 64331
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13931028 19 1400 64.3 50
global segment-length histogram

Files

Filename Size md5
NP.CGN-both.bedgraph.gz 82.83 MB b58f6f3decac67ed05661207e0ac06d6
NP.CGN-both.bedgraph.gz.tbi 662.51 KB 9eb1b5e252cf05988c5f3fc5834e8fcc
genomic_resource.yaml 1.06 KB 0e773b539260c9568d2dadf1f69e23c9
statistics/