Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/NP/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for NP cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: NP
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_NP_chn_mc float

zemke2023Conserved_Human_NP_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_NP_chn_mc [0, 1]
n
2,750,600,219
mean
0.0715
sd
0.0747

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275060021984.19% 51026956
chr1 217375950 87.31% 4047291
chr2 232498450 96.00% 4355494
chr3 192538500 97.10% 3621093
chr4 183389250 96.41% 3442195
chr5 171993000 94.74% 3219722
chr6 160617100 94.03% 3018653
chr7 150523600 94.46% 2798908
chr8 137095650 94.46% 2575295
chr9 111545000 80.60% 2081001
chr10 128589500 96.11% 2411208
chr11 128682450 95.26% 2401366
chr12 128318650 96.28% 2385352
chr13 93924400 82.13% 1758449
chr14 84030450 78.50% 1564762
chr15 73850750 72.41% 1372723
chr16 73346250 81.19% 1359372
chr17 72245850 86.77% 1334167
chr18 74066700 92.15% 1394426
chr19 52815600 90.10% 937671
chr20 60833100 94.40% 1138818
chr21 33662550 72.07% 618424
chr22 33665600 66.25% 620220
chrM 16569 100.00% 330
chrX 139452750 89.37% 2333951
chrY 15522550 27.12% 236065
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51026956 19 1650 53.9 50
global segment-length histogram

Files

Filename Size md5
NP.CHN-both.bedgraph.gz 371.76 MB 0f0650719c84307db48e4f28ba08008e
NP.CHN-both.bedgraph.gz.tbi 601.38 KB 0ace43793c178ffb48bc6019847ba975
genomic_resource.yaml 1.06 KB 09bf4fa18a8f1acd7ee0ee50253d9242
statistics/