Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/ODC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for ODC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: ODC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_ODC_chn_mc float

zemke2023Conserved_Human_ODC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_ODC_chn_mc [0, 1]
n
2,836,104,269
mean
0.0145
sd
0.0144

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 283610426986.81% 56060361
chr1 222961000 89.56% 4421137
chr2 236898400 97.81% 4708857
chr3 195435000 98.56% 3888735
chr4 187266750 98.45% 3713859
chr5 175895550 96.89% 3489092
chr6 164304950 96.19% 3257798
chr7 155433800 97.54% 3066798
chr8 140708400 96.95% 2783847
chr9 115949450 83.78% 2286397
chr10 131259450 98.10% 2607135
chr11 131955550 97.68% 2613092
chr12 131095500 98.36% 2599678
chr13 95894250 83.85% 1902668
chr14 86669850 80.97% 1712053
chr15 77317150 75.81% 1519325
chr16 76650050 84.85% 1504998
chr17 76246050 91.58% 1489660
chr18 78005750 97.05% 1516628
chr19 55019700 93.86% 1081538
chr20 62659950 97.23% 1236039
chr21 35988100 77.05% 698863
chr22 36002550 70.85% 699500
chrM 16569 100.00% 332
chrX 147605700 94.59% 2910768
chrY 18864800 32.96% 351564
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56060361 19 1500 50.59 50
global segment-length histogram

Files

Filename Size md5
ODC.CHN-both.bedgraph.gz 467.49 MB 4054debe767c7e1b2bc033dd9a22f26f
ODC.CHN-both.bedgraph.gz.tbi 597.35 KB c916358a0a569665e3bba4cc66c459ba
genomic_resource.yaml 1.07 KB 3c90c7ac298f371915a854d84d84f076
statistics/