Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/OPC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for OPC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: OPC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_OPC_chn_mc float

zemke2023Conserved_Human_OPC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_OPC_chn_mc [0, 1]
n
2,790,050,469
mean
0.0113
sd
0.0163

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 279005046985.40% 49685470
chr1 220084250 88.40% 3987674
chr2 234921750 97.00% 4226563
chr3 194130800 97.90% 3490764
chr4 185330500 97.43% 3275169
chr5 173829250 95.75% 3117163
chr6 162388250 95.07% 2906736
chr7 152713500 95.84% 2731153
chr8 138698350 95.56% 2501010
chr9 113544850 82.04% 2041832
chr10 130048750 97.20% 2359177
chr11 130229450 96.40% 2366857
chr12 129757850 97.36% 2347611
chr13 94779100 82.87% 1690286
chr14 85048700 79.45% 1537471
chr15 75132300 73.67% 1364188
chr16 74570400 82.55% 1366307
chr17 73673900 88.49% 1347996
chr18 75382500 93.79% 1352055
chr19 53610600 91.46% 991034
chr20 61575100 95.55% 1135984
chr21 34399400 73.64% 611286
chr22 34479250 67.85% 634446
chrM 16569 100.00% 332
chrX 144805650 92.80% 2069172
chrY 16899450 29.53% 233204
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49685470 19 1450 56.15 50
global segment-length histogram

Files

Filename Size md5
OPC.CHN-both.bedgraph.gz 372.93 MB cf9032f4f2d8ef3bbaaa99f74937a3fd
OPC.CHN-both.bedgraph.gz.tbi 596.0 KB 0c3accb24433635b334e449a019886c1
genomic_resource.yaml 1.07 KB b5fb3f76235bee2345a9cda6f1930150
statistics/