Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/Pvalb-BC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for Pvalb-BC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-BC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_Pvalb-BC_cgn_mc float

zemke2023Conserved_Human_Pvalb-BC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Human_Pvalb-BC_cgn_mc [0, 1]
n
929,294,369
mean
0.885
sd
0.217

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 92929436928.44% 17336143
chr1 74912950 30.09% 1399974
chr2 74642950 30.82% 1393292
chr3 58266650 29.38% 1089715
chr4 52455350 27.58% 981032
chr5 52110550 28.70% 974913
chr6 49891650 29.21% 930240
chr7 51746000 32.47% 964501
chr8 43814850 30.19% 818544
chr9 39125250 28.27% 730564
chr10 45796550 34.23% 855035
chr11 43315750 32.07% 812850
chr12 43413650 32.57% 813199
chr13 28362950 24.80% 530523
chr14 27958200 26.12% 523156
chr15 26709400 26.19% 498112
chr16 32167900 35.61% 602906
chr17 32937750 39.56% 613492
chr18 24322300 30.26% 453709
chr19 28003000 47.77% 530014
chr20 24056300 37.33% 450505
chr21 12298950 26.33% 230948
chr22 16779300 33.02% 313484
chrM 12019 72.54% 241
chrX 41781600 26.78% 742505
chrY 4412550 7.71% 82689
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17336143 19 900 53.6 50
global segment-length histogram

Files

Filename Size md5
Pvalb-BC.CGN-both.bedgraph.gz 121.3 MB 6871da5d27b2602c945b82cc60e6b282
Pvalb-BC.CGN-both.bedgraph.gz.tbi 665.58 KB ebd746326acf9b3765fbda71f911fd31
genomic_resource.yaml 1.1 KB 3d98d60dac2625f97232a4f5cd4ca3b7
statistics/