Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/Pvalb-BC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for Pvalb-BC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-BC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_Pvalb-BC_chn_mc float

zemke2023Conserved_Human_Pvalb-BC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_Pvalb-BC_chn_mc [0, 1]
n
2,796,611,019
mean
0.0659
sd
0.0558

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 279661101985.60% 55428743
chr1 220470100 88.56% 4376595
chr2 235246100 97.13% 4674539
chr3 194326900 98.00% 3865924
chr4 185624950 97.59% 3689693
chr5 174094000 95.90% 3459752
chr6 162673300 95.24% 3231791
chr7 153072500 96.06% 3034339
chr8 138973450 95.75% 2757805
chr9 113884850 82.29% 2255416
chr10 130261650 97.36% 2587115
chr11 130488750 96.60% 2589805
chr12 129955550 97.51% 2581614
chr13 94929550 83.01% 1886887
chr14 85261550 79.65% 1689905
chr15 75428050 73.96% 1491417
chr16 74867050 82.87% 1478992
chr17 74028950 88.92% 1459358
chr18 75782200 94.29% 1498503
chr19 53779850 91.75% 1062455
chr20 61715200 95.77% 1224789
chr21 34592050 74.06% 679822
chr22 34701800 68.29% 680152
chrM 16569 100.00% 332
chrX 145270850 93.10% 2847907
chrY 17165250 29.99% 323836
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55428743 19 950 50.45 50
global segment-length histogram

Files

Filename Size md5
Pvalb-BC.CHN-both.bedgraph.gz 454.45 MB f3c833d3e536a79de54562e2fbfb4f52
Pvalb-BC.CHN-both.bedgraph.gz.tbi 605.76 KB a906b64e3d95e18925d405452af05c49
genomic_resource.yaml 1.1 KB dd14a37029430c0d1a72db958eb2dd3f
statistics/