Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/Pvalb-ChC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for Pvalb-ChC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-ChC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_Pvalb-ChC_cgn_mc float

zemke2023Conserved_Human_Pvalb-ChC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Human_Pvalb-ChC_cgn_mc [0, 1]
n
879,215,569
mean
0.88
sd
0.253

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 87921556926.91% 13426280
chr1 71426500 28.69% 1086216
chr2 71106750 29.36% 1089568
chr3 55656350 28.07% 865013
chr4 49886650 26.23% 780150
chr5 49618400 27.33% 771254
chr6 47469400 27.79% 730171
chr7 48926150 30.70% 746484
chr8 41643050 28.69% 640915
chr9 37070800 26.79% 562823
chr10 43690200 32.65% 660971
chr11 41241650 30.53% 635442
chr12 41331500 31.01% 633242
chr13 27099400 23.70% 418534
chr14 26663000 24.91% 407611
chr15 25293850 24.80% 383568
chr16 30561600 33.83% 454173
chr17 31091450 37.34% 455877
chr18 22869150 28.45% 349946
chr19 26760000 45.65% 394363
chr20 22975650 35.65% 344464
chr21 11604400 24.84% 177406
chr22 15889650 31.27% 229695
chrM 12019 72.54% 233
chrX 35715500 22.89% 546991
chrY 3612500 6.31% 61170
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13426280 19 1800 65.48 50
global segment-length histogram

Files

Filename Size md5
Pvalb-ChC.CGN-both.bedgraph.gz 78.45 MB 2a64d5990c0b59dead1f3a49e0aa24ee
Pvalb-ChC.CGN-both.bedgraph.gz.tbi 671.54 KB ac5cd3af4f5b7f106831af979c794f57
genomic_resource.yaml 1.1 KB 38c19811f09b75bd8a04691795d31074
statistics/