Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/Pvalb-ChC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for Pvalb-ChC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-ChC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_Pvalb-ChC_chn_mc float

zemke2023Conserved_Human_Pvalb-ChC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_Pvalb-ChC_chn_mc [0, 1]
n
2,730,328,569
mean
0.0626
sd
0.0733

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 273032856983.57% 48282226
chr1 216219800 86.85% 3860590
chr2 231071900 95.41% 4117516
chr3 191480100 96.56% 3438735
chr4 182318950 95.85% 3276304
chr5 171017750 94.20% 3052566
chr6 159654300 93.47% 2851551
chr7 149469400 93.80% 2648884
chr8 136203400 93.84% 2445962
chr9 110803500 80.06% 1985656
chr10 127836600 95.54% 2298203
chr11 127853050 94.65% 2264658
chr12 127586900 95.73% 2251540
chr13 93425450 81.69% 1677343
chr14 83561550 78.06% 1488079
chr15 73352050 71.92% 1302133
chr16 72803450 80.59% 1291126
chr17 71646300 86.05% 1258022
chr18 73579450 91.55% 1333298
chr19 52468750 89.51% 866697
chr20 60474450 93.84% 1088434
chr21 33422050 71.55% 590603
chr22 33383800 65.69% 585616
chrM 16569 100.00% 330
chrX 135667400 86.94% 2090918
chrY 15011650 26.23% 217462
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48282226 19 1800 56.55 50
global segment-length histogram

Files

Filename Size md5
Pvalb-ChC.CHN-both.bedgraph.gz 340.62 MB e7385c604bdcc54747b91dc57ebe110c
Pvalb-ChC.CHN-both.bedgraph.gz.tbi 598.9 KB 7b2e3be39fdabc4557be2f9be4efe4fc
genomic_resource.yaml 1.1 KB 6efbdb0b3e2ab77bf4378bfbb425f6c3
statistics/