Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Human/Sncg/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Human M1 region for Sncg cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Sncg
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: pseudo_bulk_cell_type
  • species: human
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Human_Sncg_chn_mc float

zemke2023Conserved_Human_Sncg_chn_mc
HISTOGRAM FOR zemke2023Conserved_Human_Sncg_chn_mc [0, 1]
n
2,766,131,819
mean
0.0459
sd
0.051

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 276613181984.67% 51070955
chr1 218474150 87.76% 4073075
chr2 233492800 96.41% 4373805
chr3 193195050 97.43% 3623554
chr4 184171250 96.82% 3428418
chr5 172724850 95.15% 3215603
chr6 161335450 94.46% 3011490
chr7 151377450 95.00% 2812434
chr8 137674650 94.86% 2581668
chr9 112302900 81.15% 2092449
chr10 129147950 96.52% 2415551
chr11 129239600 95.67% 2400449
chr12 128894350 96.71% 2400892
chr13 94275100 82.43% 1761329
chr14 84414750 78.86% 1570373
chr15 74288200 72.84% 1381391
chr16 73734250 81.62% 1373819
chr17 72698100 87.32% 1346861
chr18 74482850 92.67% 1392038
chr19 53117400 90.62% 955525
chr20 61106400 94.82% 1145936
chr21 33908050 72.59% 620426
chr22 33939450 66.79% 628299
chrM 16569 100.00% 332
chrX 142044800 91.03% 2253876
chrY 16075450 28.09% 211362
614 contigs with no values (178831587 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51070955 19 1650 54.16 50
global segment-length histogram

Files

Filename Size md5
Sncg.CHN-both.bedgraph.gz 378.22 MB a6c3bc71985bd485afef846a9cbfb6fe
Sncg.CHN-both.bedgraph.gz.tbi 600.82 KB a2846cf592c3166e719828af1c14fd32
genomic_resource.yaml 1.07 KB 520711f42cfde06ccce0e4aaacd37850
statistics/