Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Astro/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Astro cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Astro
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Astro_cgn_mc float

zemke2023Conserved_Macaque_Astro_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Astro_cgn_mc [0, 1]
n
955,245,006
mean
0.805
sd
0.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 95524500632.15% 17365216
chr1 77166300 34.51% 1399951
chr2 59392750 30.27% 1082358
chr3 63487300 34.26% 1156281
chr4 53051800 31.21% 964729
chr5 53633950 28.63% 985514
chr6 54310550 30.33% 994216
chr7 58015700 34.15% 1052482
chr8 46387100 31.84% 849089
chr9 46728600 34.84% 852300
chr10 41660000 41.86% 757578
chr11 44969900 33.80% 818544
chr12 40448650 31.10% 738958
chr13 37017000 34.04% 672070
chr14 43079056 33.64% 785051
chr15 38604800 34.08% 701413
chr16 35360700 44.41% 637183
chr17 29075650 30.47% 530462
chr18 24548700 32.96% 447336
chr19 29544450 50.66% 538548
chr20 32824350 42.55% 600877
chrM 2000 12.07% 38
chrX 43161550 28.14% 749393
chrY 2774150 23.60% 50845
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17365216 50 1150 55.01 50
global segment-length histogram

Files

Filename Size md5
Astro.CGN-both.bedgraph.gz 113.27 MB 79360f98876f7ff773fb0adaec7487b0
Astro.CGN-both.bedgraph.gz.tbi 601.49 KB ea75fb0fd76f0ab24093237d6f0e068e
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB e2a4f690cd36e31efd065b0cd4f3ff8d
statistics/