Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Astro/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Astro cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Astro
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Astro_chn_mc float

zemke2023Conserved_Macaque_Astro_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Astro_chn_mc [0, 1]
n
2,778,762,163
mean
0.0134
sd
0.0205

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 277876216393.52% 45350642
chr1 219599392 98.20% 3719641
chr2 192422400 98.08% 3173105
chr3 182019047 98.24% 2982385
chr4 166281250 97.83% 2692616
chr5 183918050 98.19% 2881110
chr6 175312200 97.89% 2835472
chr7 166171100 97.82% 2781047
chr8 141457200 97.10% 2342406
chr9 129987650 96.92% 2194777
chr10 94819450 95.28% 1668789
chr11 129469936 97.30% 2133416
chr12 127468250 98.02% 2098094
chr13 106456780 97.90% 1798624
chr14 124597356 97.30% 2090843
chr15 109097800 96.31% 1842377
chr16 76439364 96.00% 1335952
chr17 92571950 97.00% 1479468
chr18 72449393 97.28% 1192009
chr19 54828850 94.02% 915290
chr20 75051645 97.30% 1299305
chrM 3850 23.24% 58
chrX 148053250 96.52% 1779352
chrY 10286000 87.51% 114506
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45350642 14 2050 61.27 50
global segment-length histogram

Files

Filename Size md5
Astro.CHN-both.bedgraph.gz 322.18 MB baf071e2748a21f73cc86f7053bb9e83
Astro.CHN-both.bedgraph.gz.tbi 547.07 KB 56154f91ec1f7b6159a4554ceffa82ba
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB 1f46f1d4587fcfdb203cec645cc9b820
statistics/