Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/L4/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for L4 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L4
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_L4_chn_mc float

zemke2023Conserved_Macaque_L4_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_L4_chn_mc [0, 1]
n
2,788,411,321
mean
0.0441
sd
0.0419

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278841132193.84% 55103478
chr1 220221292 98.48% 4362592
chr2 192941200 98.34% 3820825
chr3 182537647 98.52% 3616221
chr4 166815400 98.15% 3301303
chr5 184445200 98.47% 3652708
chr6 175852350 98.19% 3480940
chr7 166731464 98.15% 3299028
chr8 141872200 97.39% 2809070
chr9 130417550 97.24% 2581032
chr10 95151250 95.61% 1883751
chr11 129894036 97.62% 2569563
chr12 127800250 98.27% 2532437
chr13 106730680 98.15% 2113938
chr14 125104750 97.70% 2474358
chr15 109424100 96.59% 2165899
chr16 76776914 96.42% 1517845
chr17 92925750 97.37% 1838285
chr18 72664543 97.57% 1440226
chr19 55231400 94.71% 1077589
chr20 75308695 97.63% 1490235
chrM 5300 32.00% 81
chrX 149179200 97.26% 2880532
chrY 10380150 88.31% 195020
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55103478 14 950 50.6 50
global segment-length histogram

Files

Filename Size md5
L4.CHN-both.bedgraph.gz 438.7 MB e07d7b5418f142df7f5a37eef1461e20
L4.CHN-both.bedgraph.gz.tbi 563.18 KB f0747638d3f73521144999aa71f7678f
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.12 KB a3f261ca59f902bcab6c0fa3be1a585e
statistics/