Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/L5-IT/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for L5-IT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L5-IT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_L5-IT_chn_mc float

zemke2023Conserved_Macaque_L5-IT_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_L5-IT_chn_mc [0, 1]
n
2,783,547,299
mean
0.0528
sd
0.0511

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278354729993.68% 54416190
chr1 219904042 98.34% 4312420
chr2 192676100 98.20% 3781763
chr3 182284047 98.38% 3578089
chr4 166545800 97.99% 3264382
chr5 184171942 98.32% 3616681
chr6 175572650 98.04% 3440596
chr7 166451700 97.99% 3262106
chr8 141664300 97.24% 2779585
chr9 130197900 97.07% 2554100
chr10 94973800 95.43% 1863250
chr11 129679886 97.46% 2536762
chr12 127625900 98.14% 2504062
chr13 106578880 98.02% 2091339
chr14 124840300 97.49% 2445974
chr15 109258950 96.45% 2143138
chr16 76594514 96.19% 1497624
chr17 92761950 97.20% 1817434
chr18 72558443 97.43% 1426409
chr19 55022650 94.35% 1053226
chr20 75175995 97.46% 1471999
chrM 4450 26.87% 73
chrX 148674700 96.93% 2787968
chrY 10328400 87.87% 187210
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54416190 14 1450 51.15 50
global segment-length histogram

Files

Filename Size md5
L5-IT.CHN-both.bedgraph.gz 421.37 MB cb4dd9a8c7c3a3883b54b8fa1416e412
L5-IT.CHN-both.bedgraph.gz.tbi 561.3 KB 8b2aaf66f7d1736ada27ab471cd99a49
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB c8e8d7c11576cdc023e1bd0a8bd49f02
statistics/