Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/L6-CT/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for L6-CT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6-CT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_L6-CT_cgn_mc float

zemke2023Conserved_Macaque_L6-CT_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_L6-CT_cgn_mc [0, 1]
n
960,002,526
mean
0.837
sd
0.265

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 96000252632.31% 17667999
chr1 77481000 34.65% 1427452
chr2 59640700 30.40% 1102000
chr3 63755850 34.41% 1173576
chr4 53301250 31.36% 982194
chr5 53864850 28.76% 997542
chr6 54556450 30.46% 1008226
chr7 58298300 34.32% 1073206
chr8 46576550 31.97% 862001
chr9 46913400 34.98% 863932
chr10 41824600 42.03% 769164
chr11 45187600 33.96% 832716
chr12 40614100 31.23% 750691
chr13 37162600 34.18% 685008
chr14 43297300 33.81% 798955
chr15 38763700 34.22% 714475
chr16 35538350 44.63% 652146
chr17 29232200 30.63% 538987
chr18 24650743 33.10% 454110
chr19 29754633 51.02% 551442
chr20 32943250 42.71% 608841
chrM 2250 13.58% 41
chrX 43831650 28.58% 769572
chrY 2811200 23.92% 51722
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17667999 33 1100 54.34 50
global segment-length histogram

Files

Filename Size md5
L6-CT.CGN-both.bedgraph.gz 118.82 MB 4fee3bc4c7066bd29284ced98d3ae800
L6-CT.CGN-both.bedgraph.gz.tbi 601.29 KB fddd0360fdda19a913d7f3f5559240d9
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB 1572727670ed278dd1ab13933ad6b72e
statistics/