Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/L6-CT/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for L6-CT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6-CT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_L6-CT_chn_mc float

zemke2023Conserved_Macaque_L6-CT_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_L6-CT_chn_mc [0, 1]
n
2,784,751,205
mean
0.0463
sd
0.0467

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278475120593.72% 54429217
chr1 219977742 98.37% 4315485
chr2 192734950 98.23% 3783234
chr3 182352547 98.42% 3581098
chr4 166621350 98.03% 3266773
chr5 184247992 98.36% 3616695
chr6 175649750 98.08% 3444247
chr7 166525100 98.03% 3263919
chr8 141710200 97.28% 2779259
chr9 130247500 97.11% 2555296
chr10 95018300 95.48% 1865874
chr11 129733186 97.50% 2540435
chr12 127673000 98.18% 2505687
chr13 106621230 98.05% 2090925
chr14 124911256 97.54% 2449736
chr15 109304650 96.49% 2144179
chr16 76632414 96.24% 1499998
chr17 92794200 97.23% 1818358
chr18 72577243 97.45% 1427875
chr19 55070600 94.44% 1052873
chr20 75203995 97.49% 1473697
chrM 3900 23.55% 67
chrX 148795150 97.01% 2768721
chrY 10344950 88.01% 184786
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54429217 6 1250 51.16 50
global segment-length histogram

Files

Filename Size md5
L6-CT.CHN-both.bedgraph.gz 423.21 MB 6791597ae17c2219e457153685f5af5e
L6-CT.CHN-both.bedgraph.gz.tbi 561.65 KB 94ad21fac91f500be0703c1b6f48e660
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB 7a591abb8f69d5a1717857adf1656d05
statistics/