Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/L6-IT/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for L6-IT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6-IT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_L6-IT_cgn_mc float

zemke2023Conserved_Macaque_L6-IT_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_L6-IT_cgn_mc [0, 1]
n
961,787,843
mean
0.839
sd
0.262

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 96178784332.37% 18024298
chr1 77616300 34.71% 1455763
chr2 59742950 30.45% 1123799
chr3 63848150 34.46% 1199881
chr4 53395400 31.42% 1002843
chr5 53954100 28.80% 1014498
chr6 54645300 30.51% 1026456
chr7 58390150 34.37% 1096555
chr8 46654650 32.03% 878637
chr9 46986700 35.03% 881296
chr10 41896300 42.10% 785610
chr11 45259550 34.01% 849792
chr12 40669250 31.27% 763848
chr13 37218350 34.23% 698553
chr14 43384000 33.88% 814490
chr15 38828350 34.28% 729386
chr16 35618200 44.73% 666541
chr17 29284450 30.69% 549001
chr18 24694543 33.16% 463762
chr19 29838450 51.17% 562693
chr20 33000000 42.78% 620585
chrM 3000 18.11% 52
chrX 44033500 28.71% 787524
chrY 2826200 24.05% 52733
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18024298 43 950 53.36 50
global segment-length histogram

Files

Filename Size md5
L6-IT.CGN-both.bedgraph.gz 124.45 MB e49ef1553271a63f5ed2b5e60a8a590c
L6-IT.CGN-both.bedgraph.gz.tbi 603.22 KB 340c3afa69157d7765eaa4d0aa4275eb
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB c009bcf557beda1f3012275a44e2d440
statistics/