Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/L6-IT/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for L6-IT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6-IT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_L6-IT_chn_mc float

zemke2023Conserved_Macaque_L6-IT_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_L6-IT_chn_mc [0, 1]
n
2,787,261,449
mean
0.0576
sd
0.0528

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278726144993.81% 55091226
chr1 220146092 98.45% 4360626
chr2 192887000 98.31% 3820224
chr3 182482897 98.49% 3615363
chr4 166746700 98.11% 3300825
chr5 184382292 98.43% 3653029
chr6 175788050 98.16% 3479919
chr7 166661050 98.11% 3299705
chr8 141824950 97.35% 2808096
chr9 130353100 97.19% 2580733
chr10 95107700 95.57% 1883133
chr11 129845086 97.58% 2568805
chr12 127751300 98.24% 2531266
chr13 106709630 98.14% 2113455
chr14 125040450 97.64% 2474141
chr15 109386200 96.56% 2165993
chr16 76732964 96.37% 1517229
chr17 92889550 97.33% 1838164
chr18 72631493 97.53% 1439719
chr19 55178500 94.62% 1075480
chr20 75276045 97.59% 1488985
chrM 5350 32.30% 77
chrX 149065750 97.18% 2880068
chrY 10369300 88.22% 196191
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55091226 14 1200 50.59 50
global segment-length histogram

Files

Filename Size md5
L6-IT.CHN-both.bedgraph.gz 437.36 MB 3cea857527fb7deeb75f2ce47fa8b5d4
L6-IT.CHN-both.bedgraph.gz.tbi 562.88 KB 80e827f3e13a383c7e024818fa8a3f70
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB ff4ce0535c4d69c8a7af394bdd07318f
statistics/