Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/L6b/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for L6b cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6b
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_L6b_chn_mc float

zemke2023Conserved_Macaque_L6b_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_L6b_chn_mc [0, 1]
n
2,769,463,745
mean
0.062
sd
0.065

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 276946374593.21% 51679266
chr1 219010892 97.94% 4114350
chr2 191927350 97.82% 3620880
chr3 181552650 97.98% 3424429
chr4 165816000 97.56% 3117869
chr5 183437700 97.93% 3463996
chr6 174816350 97.62% 3276287
chr7 165745214 97.57% 3117734
chr8 141062950 96.83% 2654212
chr9 129585200 96.62% 2435844
chr10 94515500 94.97% 1781722
chr11 129082450 97.01% 2411034
chr12 127152300 97.78% 2391806
chr13 106174280 97.64% 1993107
chr14 124205050 96.99% 2335684
chr15 108774300 96.02% 2040308
chr16 76147914 95.63% 1419886
chr17 92291250 96.71% 1736028
chr18 72287750 97.06% 1375931
chr19 54494650 93.45% 959283
chr20 74838345 97.02% 1401823
chrM 3450 20.83% 58
chrX 146371800 95.43% 2457186
chrY 10170400 86.53% 149809
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51679266 14 2050 53.59 50
global segment-length histogram

Files

Filename Size md5
L6b.CHN-both.bedgraph.gz 375.78 MB 7dc7f416fc3a5c160a2f93ad426480da
L6b.CHN-both.bedgraph.gz.tbi 555.83 KB 0c2721997063344721ff1ffff015bb14
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.12 KB 70b7ef178911dbe48e9e74adff5a54af
statistics/