Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Lamp5/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Lamp5 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Lamp5
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Lamp5_chn_mc float

zemke2023Conserved_Macaque_Lamp5_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Lamp5_chn_mc [0, 1]
n
2,781,275,400
mean
0.042
sd
0.0444

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278127540093.60% 53247718
chr1 219750542 98.27% 4235856
chr2 192535650 98.13% 3711039
chr3 182167547 98.32% 3518386
chr4 166423650 97.92% 3206118
chr5 184049350 98.26% 3548672
chr6 175455000 97.97% 3377206
chr7 166341550 97.92% 3204094
chr8 141558650 97.17% 2731000
chr9 130089200 96.99% 2507484
chr10 94901300 95.36% 1835035
chr11 129561586 97.37% 2486967
chr12 127538850 98.07% 2464199
chr13 106515130 97.96% 2056735
chr14 124735300 97.41% 2397922
chr15 109175950 96.37% 2110024
chr16 76521400 96.10% 1470842
chr17 92681900 97.12% 1784290
chr18 72512750 97.37% 1405739
chr19 54929250 94.19% 1013020
chr20 75112295 97.37% 1447930
chrM 4150 25.05% 64
chrX 148400050 96.75% 2582829
chrY 10314350 87.75% 152267
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53247718 30 2150 52.23 50
global segment-length histogram

Files

Filename Size md5
Lamp5.CHN-both.bedgraph.gz 403.03 MB feb2f624f9ef73a34b0fddc840bda413
Lamp5.CHN-both.bedgraph.gz.tbi 559.11 KB decb1ba12b9a619a6d2fd052a2e940cc
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB f475144f97ae8048541a0bb9a94b345e
statistics/